Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00979 ATGAGTTCAGAGAAAGGTTTTACTTCTTCTTCTTCTACTTCTTCAACCAACCAACCCAAGGCCATGAATTGTGAGACCCCTAAAGCCATTAACACAAAAAAGGATCGCCACACCAAGGTGAATGGGAGAGAACGCCGTGTTCTTTTGCCACCACTTTGTGCTGCTCGCATCTTCCAACTCACCAATGAGCTAGGCTTCAAGACTAATGGAGAAACCATTGAATGGCTCTTACGCCAAGCTGAGCCCTCCATTATTGCTACCACTGGCACTGGAATAACACCATCTTCCATGGTTGTCGAGGACAAAACTACTGGCCAAAATGTGGATTTGGTTGCCATGTCCGAACAAACATTTCCACCCTTGGAGTTTGCAAATTTTGATGTGGAGTTTTCTGGTAATGAGATATCAATGCTCCAATCAATGATGAACAAGTTGACTTGA 441 0.4399 MSSEKGFTSSSSTSSTNQPKAMNCETPKAINTKKDRHTKVNGRERRVLLPPLCAARIFQLTNELGFKTNGETIEWLLRQAEPSIIATTGTGITPSSMVVEDKTTGQNVDLVAMSEQTFPPLEFANFDVEFSGNEISMLQSMMNKLT* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00979 146 MobiDBLite consensus disorder prediction 1 37 - -
Rops3g00979 146 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
Rops3g00979 146 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 109 IPR005333 GO:0003700
Rops3g00979 146 MobiDBLite consensus disorder prediction 1 25 - -
Rops3g00979 146 Pfam TCP family transcription factor 32 97 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00979 Rops-Chr3 12559149 12559589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00979 6 97 TCP Transcription Factor Family AT5G23280 56.522 4.67e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Rops3g00979 TCP 9.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00979 - K16221 var:108322003 138.658