Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00978 ATGAGTAAAAGAGAGGGACCCAATGAGACAAGGAATGTTGCTTTTGTTATAATTGTTGTATTGTTCATTTGCATTGTGGGGCCAGGGCAAGTTTCTTGTCAGAAAAATGGTGCTGGTTCTGGTTCTGGTGCTGGGGTTGAGATATTTGCCCAGCAATTGTACAGTAGCATGGACAATTACACGTCTATTTTCAAAGCTGCAATAAAAAAAGAGTTGGGTTATTGCATAATTGACGTGGATGCTGATTGGGATGGGGCGTTCAATTTCACCAAAGATCTTTCCTTTTTGACCATGTGTGCCCAGCAAATGAAAGGAGATATCACGCAGCGCATGTGCACAGCAGCAGAGATAGAAGCCTATGCCCGAAGTTTTGTTACGGGAGACAAGTCAGGGTCAAGCAGAACTTTATCCAACTTCTTGAAGCCCAACCTAAACTGTAATTTGAGTTCATGGCTTAATGGATGTGAGCCAGGATGGGGCTGTAGAGCTAATCAGAAAGTAGACCTTAACAGTAAGAAGAAGGAGCTACCTCTTAGATCTAGTGACTGCCAACCTTGTTGTGAAGGTTTCTTTTGCCCTCGTGGTATCACATGCATGATACCTTGCCCTTTGGGCTCTTATTGTCCACGTGCGCAACTCAATAAAACCAGTGGAATGTGTGAACCATATCGTTATCAGCTACCTCCTGGAAAGGATAACCATTCTTGTGGGGGAGCAGATATTTGGGCTGACATTACTAGCAGTGGCGAGGTATTCTGTTCAGCAGGATCATTCTGTCCATCTACAATCATAAAAAATCCTTGCAATAAGGGGTATTACTGCAGAACAGGTTCTACAGCTCAAGAGCGGTGTTTCAGGTTGGCAACTTGTAAGCCTAAATCAGCAAATCAAAATATTACTGCATATGGTGTCCTAGTTTTTGCTGGCTTGTGTTTCTTGCTTATTATCATATATAACTGTTCTGACCAAGTTCTTGCAACTCGAGAAAAAAGACAAGCAAACTCAAGAGAAAGGGCTGCTCAAAGTGTAAGAGAAACACAAGCACGTGAAAAATGGAAATCTGCAAAAGATGTTGCTAAGAAGCATGCAGTAGGACTGCAATCCCAATTATCACGTACATTTTCTCGCAAAAAAACTTCAAAGCAGCCAGATTTGAAAGGTTTCGGTTCAAAACATTCAGATTCTAGCTTACCACCTATGGCACCGGGAGGTGCTGGTACATCTAAAGGAAAGAAAAAGGATAAAAGCAACCTCTCAAAAATAATAAATGATATTGAGGACGACCCTGATAGTCAAGAAGGGTTCAACGTTCAGATAGGTGATAAAAATGTCAAAAAGCAAGCACCAAGGGGTAAGCAGTTGCATACTCAGAGCCAAATTTTCAAGTATGCATATGGTCAGATTGAAAAGGAAAAGGCTTTACAGGAACAAACTAAAAACATGACCTTCTCCGGAGTAATTTCAATGGCTAGTGACATTGAGATAAGGAAGAGGCCTACCATTGAGGTTGCTTTTAAAGATTTGACCCTCACTTTGAAAGGGAAAAACAAACACCTATTAAGAAGTGTAACTGGTAAGTTATATCCTGGTAGAGTTTCAGCAGTCATGGGCCCATCTGGGGCTGGTAAGACAACATTTCTTTCTGCATTAACTGGAAAAGCAACTGGATGTCACACAACTGGGCAAGTTCTTGTAAATGGCAAGGAATCGTCTATGCGGTCTTACAAAAAGATCATTGGCTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGACAGTGGAGGAGAATCTATGGTTCAGTGCTAGATGCAGACTCTCTGCTGATCTACCAAAAGAAGAGAAGGTGTTGGTGGTTGAAAGAGTCATTGAGTCCTTAGGCCTGCAGACAATAAGGGATTCTCTTGTTGGGACAGTGGAGAAGCGAGGAATCTCTGGAGGTCAAAGGAAAAGAGTAAACGTTGGACTGGAAATGGTTATGGAACCTTCCCTTCTAATTCTGGATGAACCTACATCCGGTTTAGACAGCTCATCTTCTCAATTACTGCTTAGAGCACTTAGACGTGAGGCTCTTGAAGGAGTGAATATATGTATGGTCCTTCACCAACCGAGTTACACCTTGTTCAAGATGTTTGATGATTTTATACTGCTTGCTAAAGGAGGTCTTACAGTGTATCATGGACCAGTGAACAAAGTGGAAGAGTACTTCTCAAGCATGGGGATTGTTGTCCCTGACCGTGTCAACCCTCCAGATTACTACATTGACATTTTAGAAGGAATAGTAAAACTAAGTCCAAGCACAGGAGTGAACTATAAACAATTACCTGTTAGATGGATGCTTCATAATGGGTACCCCGTGCCTATGGATATGCTACAGAGTGTTGAAGGATTGACCACCCCAAGTAGCGATGGTTCAGCACATGGAGGAGCTACTCCTGCACAGGATGCTGAGGCACCTTCTTTTGCTGGAGAACTTTGGCAGGATGTAAAGTGCAATGTTGAGATGAAGAGGGACACCCTTCAACTCAACTTCTTAAAGTCAAACGATTTGTCCGATAGGAATCCACCCGGGCCGATCCGACAATACAAGTACTTTCTCGGAAGAGTTGGTAAGCAGCGGCTAAGAGAAGCTAGAACACAAGCTGTAGATTTTCTGATTTTGCTGTTAGCTGGCCTCTGCTTGGGAACACTTGCCAAAGTGAGTGATGAAACTTTTGGAGCAACCGGTTATACATACACTGTAATAGCAGTATCACTCCTTTCCAAGATTGCGGCTCTCAGATCCTTCTCATTAGATAAGTTGCACTACTGGAGGGAAAGTGCTTCCGGGATGAGTAGCCTGGCTTACTTTCTTTCGAAGGATACGGTTGACCATTTCAGTACACTTATCAAACCACTTGTTTATCTCTCCATGTTCTATTTCTTCAACAATCCAAGATCATCTGTCACGGATAACTACATTGTTCTGCTGTGCTTGGTGTATTGTGTCACTGGCATTGCTTATGTGTTGGCAATTTTCTTTCAACCTGGTCCAGCTCAGCTGTGGTCAGTGTTACTTCCTGTAGTTTTGACTCTAGTAGCAACCTATGATAATGAAGAAGATAGCGGTATTGTGCGCTTTCTATCCGACTTGTGCTACACCAAATGGGCTCTAGAAGCATTTGTAATATCAAATGCTAAAAGATATGCTGGAGTTTGGTTAATAAGTCGATGTGGTGCACTCCATTCTTATGGCTATGATCTCAAACATTGGAAACAATGTTTAGGCCTTCTTGTAGCGACCGGAATAATTAGTCGTATGCTTGCATTTTTTTGTATGATAACTTTCCAGAAGAAGTAG 3339 0.4223 MSKREGPNETRNVAFVIIVVLFICIVGPGQVSCQKNGAGSGSGAGVEIFAQQLYSSMDNYTSIFKAAIKKELGYCIIDVDADWDGAFNFTKDLSFLTMCAQQMKGDITQRMCTAAEIEAYARSFVTGDKSGSSRTLSNFLKPNLNCNLSSWLNGCEPGWGCRANQKVDLNSKKKELPLRSSDCQPCCEGFFCPRGITCMIPCPLGSYCPRAQLNKTSGMCEPYRYQLPPGKDNHSCGGADIWADITSSGEVFCSAGSFCPSTIIKNPCNKGYYCRTGSTAQERCFRLATCKPKSANQNITAYGVLVFAGLCFLLIIIYNCSDQVLATREKRQANSRERAAQSVRETQAREKWKSAKDVAKKHAVGLQSQLSRTFSRKKTSKQPDLKGFGSKHSDSSLPPMAPGGAGTSKGKKKDKSNLSKIINDIEDDPDSQEGFNVQIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALQEQTKNMTFSGVISMASDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRSVTGKLYPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGQVLVNGKESSMRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQTIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGIVVPDRVNPPDYYIDILEGIVKLSPSTGVNYKQLPVRWMLHNGYPVPMDMLQSVEGLTTPSSDGSAHGGATPAQDAEAPSFAGELWQDVKCNVEMKRDTLQLNFLKSNDLSDRNPPGPIRQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDETFGATGYTYTVIAVSLLSKIAALRSFSLDKLHYWRESASGMSSLAYFLSKDTVDHFSTLIKPLVYLSMFYFFNNPRSSVTDNYIVLLCLVYCVTGIAYVLAIFFQPGPAQLWSVLLPVVLTLVATYDNEEDSGIVRFLSDLCYTKWALEAFVISNAKRYAGVWLISRCGALHSYGYDLKHWKQCLGLLVATGIISRMLAFFCMITFQKK* 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00978 1112 FunFam ABC transporter G family member 24 497 739 - -
Rops3g00978 1112 ProSitePatterns ABC transporters family signature. 644 658 IPR017871 GO:0005524|GO:0016887
Rops3g00978 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 742 IPR027417 -
Rops3g00978 1112 CDD ABCG_EPDR 501 727 - -
Rops3g00978 1112 MobiDBLite consensus disorder prediction 331 416 - -
Rops3g00978 1112 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 462 1099 - -
Rops3g00978 1112 Gene3D - 492 741 IPR027417 -
Rops3g00978 1112 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 503 744 IPR003439 GO:0005524
Rops3g00978 1112 SMART AAA_5 529 730 IPR003593 GO:0016887
Rops3g00978 1112 Pfam ABC transporter 520 672 IPR003439 GO:0005524
Rops3g00978 1112 Pfam ABC-2 type transporter 701 1112 IPR043926 GO:0140359
Rops3g00978 1112 MobiDBLite consensus disorder prediction 795 816 - -
Rops3g00978 1112 MobiDBLite consensus disorder prediction 331 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00978 Rops-Chr3 12540957 12548065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00978 530 725 Calmodulin-binding Proteins AT2G36910 30.093 5.78e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00978 - - gmx:100809312 1904.41