Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00975 ATGAGCAGCTTAAGGCCTGAATTGCATGTTGCACAACAAATTCGGCGTGACAAATTGAGGATCCAGAACAGTTCACAGCATTTACAAGAGTTCCCTAACAATCTGGAACAATTATCATTACAAAACTTGGATCTTCTTCAAGTTAGGAACGTGAGAAATGGCAGCAACAACAACATGCTTGATGAGGCAGCTCTTTACTTTTCAACGCCGTCGAATCCTTCTTTATCTGCTCCTAGGAACACGTTGTTGGAGTGTCAGGAACTAGGTGCAGCTGAACCAACTAGGCTAATGATGCCTCCTCACTATGGTTCGTTTCCCCATTCATCGTCAAGCATTCATTCTTCCCCAAAAGAACAATGCGAAGCGCGTAATTGGAGAAACAGTGGCCCCCATCAAGTCTCTGATTGGATGGTGAATTATGCAAGCACTTCTGTGGGTAACGAAAGCAATCCCAACTCTTTCTTGAATGCTGAGCTCAATAATATGTCTACTACTCACCAGCACTATGGGAAGCCTAGCTGTAATGTACTCACTAGTAGTAGTGAAATGGCTCAAAAGCAATTAGGGGAAATGCAAATGCAATATCCTTCTTCTTCTCCTCCACTCTATCATAATGCTTTGCAGGATATTCTCAAGTCAGCTTCTATCAGTTCACATGGTTCAGAAATGATGCACCATGGCATTTGGGGAGGGAATAATAGTGAGCCTATACTTCAACCAAATAATAATTTGCGTTTTGGGAGTGCTAATTTGTGGACAAATCGAGCTGTTGACAACAACACCCTTCCTCAGGGTCTGTCTTTGTCACTTTCATCAAATTCACAATCCAAGCCTTCTGGTTCTTCTCACTTTGAAGAAGGGTCTGTATCACACGACTCTCAATATTCAAAGTCTGTGAATGTGAAATCTATCGTGAAACCATCTATTATTTCTAGAGATAGTGGGAAATCACTTCATCAAGACCCTATGGGAATATCTTCAAACACTAGTTATAGAAATGTTGGTCCCCTTGGCCCCTTCACTGGTTATGCCACCATTTTGAAGAGTTCAAGGTTCTTAAAACCTTGCCAACAGCTGTTAGATGAATCCTGCTGTCAATCTGATCCAAAATTTGCGAAATCATGTGATGTTCCACAGTGGGTCTCCAGAGAAGTCAGTGCTTCTCCTTCTGCTGATGCTGTTCATGTAGATGAAAGTGGGGTTGCTGCTGCAAAAGGTGGTAATTCAGGTGCTTCATCCTCTATGTTCTATGTTTCAAAGGAAAATAGCGCTGATGGCGGAGCCGTGAGTAGCTTTTGTCTGTCTTCTCGTCCCGAGTGCCAAAAGAATAAGGCAAAACTCCTGTTCATGCAAGATGAGGTTACTAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTTGTTTCATCCTTTGAATCAGTAGCGGGTCTCAGTTCTGCTACCCCTTACATTTCCCTGGCTCTCAAATCAGTGTCAAGACACTTCAGGTGCCTGAAAAATGCTATCTCAGATCAACTCAAGCTGACATGTGAAGTATTGGGAGAGGACTTTTCAATACCAACCACAAGTACTAGTTGTAAAATTGACAATAACATGGCAAGGCTAAGGTGCATGGACCAAAGCTTTCAAAAGAACAAATCTGGAGGGGGTAACATTGACTTTCTTGAACCCCAACAACACGTATGGAGGCCCCAGAGAGGCTTACCAGAACGCTCAGTGGCAATTCTTAAAGCTTGGTTATTTGAACATTTTCTTCATCCGTACCCCACAGACACTGATAAACACATGTTAGCTACTCAAACAGGTCTATCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTCCGAGTGTGGAAACCAATGGTTGAGGAAATACACATGCTTGAAACAAAAGGCACAACAGAAGCCCACCAGAACTCTAGTAAAAATGAAGGAGCTTCTGCCTCTAAAGGTAGCAGCCAGCCTCAGGCTGTGACCAAGTTAGCTACACATGCAATCCCTGAAAGGCAATTTCATCAATGTTTAGAAATGGGGTCATCCTCAGCCTGCAATGAGGAAAAGGAAACAGATGAAGAACAATGGAATCAAGAGAAGAGGTCTAAATTGGAATGTGAGATTACACCAAACTCAGTGATGGGTTTTATGCCATACCGACGTGGTGGGATTGAAATTGGTGGACTTGGATCTGTGTCACTAACTTTGGGTCTGAGACATGGTGTTGAAGGTGTACAACAACAGTTGCAACAAGAGGAGGAGCTTAGACGTCAATTTGGAGGGCACATGATCCATGACTTTGTGGGCTGA 2313 0.4293 MSSLRPELHVAQQIRRDKLRIQNSSQHLQEFPNNLEQLSLQNLDLLQVRNVRNGSNNNMLDEAALYFSTPSNPSLSAPRNTLLECQELGAAEPTRLMMPPHYGSFPHSSSSIHSSPKEQCEARNWRNSGPHQVSDWMVNYASTSVGNESNPNSFLNAELNNMSTTHQHYGKPSCNVLTSSSEMAQKQLGEMQMQYPSSSPPLYHNALQDILKSASISSHGSEMMHHGIWGGNNSEPILQPNNNLRFGSANLWTNRAVDNNTLPQGLSLSLSSNSQSKPSGSSHFEEGSVSHDSQYSKSVNVKSIVKPSIISRDSGKSLHQDPMGISSNTSYRNVGPLGPFTGYATILKSSRFLKPCQQLLDESCCQSDPKFAKSCDVPQWVSREVSASPSADAVHVDESGVAAAKGGNSGASSSMFYVSKENSADGGAVSSFCLSSRPECQKNKAKLLFMQDEVTRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKSVSRHFRCLKNAISDQLKLTCEVLGEDFSIPTTSTSCKIDNNMARLRCMDQSFQKNKSGGGNIDFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGTTEAHQNSSKNEGASASKGSSQPQAVTKLATHAIPERQFHQCLEMGSSSACNEEKETDEEQWNQEKRSKLECEITPNSVMGFMPYRRGGIEIGGLGSVSLTLGLRHGVEGVQQQLQQEEELRRQFGGHMIHDFVG* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00975 770 CDD homeodomain 563 624 IPR001356 GO:0003677
Rops3g00975 770 ProSiteProfiles 'Homeobox' domain profile. 560 623 IPR001356 GO:0003677
Rops3g00975 770 SMART prehox3 341 505 IPR006563 -
Rops3g00975 770 SMART HOX_1 563 627 IPR001356 GO:0003677
Rops3g00975 770 MobiDBLite consensus disorder prediction 635 661 - -
Rops3g00975 770 FunFam BEL1-like homeodomain protein 9 566 628 - -
Rops3g00975 770 MobiDBLite consensus disorder prediction 267 295 - -
Rops3g00975 770 Pfam Associated with HOX 346 504 IPR006563 -
Rops3g00975 770 Gene3D - 566 628 - -
Rops3g00975 770 Pfam Homeobox KN domain 580 619 IPR008422 GO:0003677|GO:0006355
Rops3g00975 770 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 200 647 - -
Rops3g00975 770 SUPERFAMILY Homeodomain-like 565 629 IPR009057 -
Rops3g00975 770 MobiDBLite consensus disorder prediction 634 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00975 Rops-Chr3 12499785 12507059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00975 435 741 Homeobox Transcription Factor Family AT4G34610 43.548 5.17e-68 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops3g00975 POX 3.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00975 - - vum:124831694 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00655 7 8632712 8639675 Rops3g00975 3 12499785 12507059 PCT