Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00969 ATGAAGTCACAGCACAAAATCGCTCTTGCTTTTGTTATTAGCTTGCTCTGGATTCAGCACTCATTTTGTGCAGACAAAGCTTCTGATACATCTGGCCTAAACAAATGGACATGTAGATGTTCTTCTTTCCAAGGGAACCAGAGCTACTCTCTGGCTAATTGTTCTAAGTCATGTGATTGCCGTTCAGATGCTGATGAGAGAGCATCCATATGGACATGCATATGTGATCCCAATGGGTTTCCCCAAGTGGCAGCAGATGGTCATAGCCCTAATTGCTTTCATGCCTGCAACTGCACCTGGGGAACTGTCAGCACATCACTAGATTCAAAGAAACACATTTCCAGCAAAGCTGTTATAGTTATTCTATTAATATGTGTTATATGCACAACTGTTGCATTTCTTGCCTCAGTTATATGCTATGTCTATCGAAGGGACAGATGTCATATTCAATCACCTATATTCTCACCAGATAAGGAAACAAGTAGTGGTAGTACCACCAAACTAATTAGTTATAGGACAGGGACTTCTTCAGTGCCAGAAACAAAATTTTCTGTAAATTCTCCTATTTGTCACATTACTGGATGCTTTCAGAAAGCCTCATTCTTGTTTGGGAGCCAGAAAGAATTTTTTCATGGAAATGTCATTCAATTTTCGTTTGCTGAACTGGAAAATGCCACTGAAAAATTTTCAGCTTCCAACCTTATTGGACTAGGTGGAAGTAGTTATGTATATCGTGGTTGGCTGAAAGATGGTAGTAATGTGGCAGTTAAGCGGCTAAAAGATCAAGGAGGGCTAGAAGCAGACTCCTTATTTTTCAAGGAGATTGAACTGTTATCTAGACTTCATCATTGTCATTTGGTGCCTTTGCTGGGATACTGCTCAGAATTAAAAGGAAAGCATGTTCAGAGGTTACTAGTATTTGAGTACATGACTAATGGGAGTTTGAGGGACTGTTTAGATGGAGTTTCTGGAAAATATATGGATTGGACAACTCGTGTTATGATTGCAATAGGAGCTGCAAGGGGCTTGGAATATCTCCATGAAGCAGCTGCTCCAAGAATTCTTCATAGAGATGTCAAATCAACCAACATTCTTCTGGATGAAAATTGGCAAGCGAAAATAACTGATCTTGGTATGGCTAAGAACTTGAGATCTGATGATGACCTAGCAAGCTGTTCAAATTCACCAGCAAGAATGCAGGGGACATTTGGCTATTTTGCACCTGAGTATGCTATTGTTGGTAGAGCCTCTCTTGAATCAGATGTCTTCAGTTTTGGAGTGGTTCTTCTTGAGCTTATCAGTGGTCGGCAACCTATCCATAAATCTTCAGGCAAAGAAGAAAGCCTCGTTATATGGGCTACTCCGCGCTTACAGGATAGTATGCGGGTAATAACCGAGTTGGTTGATCCACAATTGAAAGGAAACTTCCCAAAAGAAGAGGTGCATATAATGGCATACTTGGCAAAAGAGTGTTTGCTGCTAGATCCTGACACTAGACCAACCATGAGTGAGGTTGTTCAGATTCTTTCAAGTATTTCCCCAGTAAAATCTAGGAGAAGAAACATTCCAATGAGCCTGCTTCAGGAATCAGAGGATGCAGAAAAACAAAGGGAAGCTCCATCTATTAAATATCCAACTCATGGTTCATTGCCACTAGATATCAATCACAGTCAGTGTGTTGGGAACAAAAATAAAGAAGCAGATGCAGTTTCAGCTGAGTATATGGGAAGTTTGATCCTCTTGACTTCAACATCTGATGGCAGGCATGCATCAGAAGAGGAAATGGTAGACCTAACTGAGCCTCGGTTTGAATCATTTTGCATGACAAATGTCAATGTCCCTTGA 1845 0.407 MKSQHKIALAFVISLLWIQHSFCADKASDTSGLNKWTCRCSSFQGNQSYSLANCSKSCDCRSDADERASIWTCICDPNGFPQVAADGHSPNCFHACNCTWGTVSTSLDSKKHISSKAVIVILLICVICTTVAFLASVICYVYRRDRCHIQSPIFSPDKETSSGSTTKLISYRTGTSSVPETKFSVNSPICHITGCFQKASFLFGSQKEFFHGNVIQFSFAELENATEKFSASNLIGLGGSSYVYRGWLKDGSNVAVKRLKDQGGLEADSLFFKEIELLSRLHHCHLVPLLGYCSELKGKHVQRLLVFEYMTNGSLRDCLDGVSGKYMDWTTRVMIAIGAARGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNLRSDDDLASCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSSGKEESLVIWATPRLQDSMRVITELVDPQLKGNFPKEEVHIMAYLAKECLLLDPDTRPTMSEVVQILSSISPVKSRRRNIPMSLLQESEDAEKQREAPSIKYPTHGSLPLDINHSQCVGNKNKEADAVSAEYMGSLILLTSTSDGRHASEEEMVDLTEPRFESFCMTNVNVP* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00969 614 SMART serkin_6 229 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00969 614 Pfam Protein kinase domain 231 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00969 614 FunFam receptor-like serine/threonine-protein kinase NCRK 310 521 - -
Rops3g00969 614 FunFam receptor-like serine/threonine-protein kinase NCRK 203 309 - -
Rops3g00969 614 SUPERFAMILY Protein kinase-like (PK-like) 210 509 IPR011009 -
Rops3g00969 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 354 366 IPR008271 GO:0004672|GO:0006468
Rops3g00969 614 PANTHER OS01G0750732 PROTEIN 33 527 - -
Rops3g00969 614 ProSitePatterns Protein kinases ATP-binding region signature. 235 257 IPR017441 GO:0005524
Rops3g00969 614 Gene3D Phosphorylase Kinase; domain 1 203 309 - -
Rops3g00969 614 ProSiteProfiles Protein kinase domain profile. 229 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00969 614 Gene3D Transferase(Phosphotransferase) domain 1 310 531 - -
Rops3g00969 614 CDD STKc_IRAK 235 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00969 Rops-Chr3 12400119 12406420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00969 1 611 Receptor kinase-like Gene Family AT2G28250 52.998 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Rops3g00969 Pkinase 6.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00969 - - gmx:100817870 1018.07