Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00966 ATGGCTTCTGTTAATTCAAGATTTTTAAGTTTTCCAGATGATCCAGAACTAGCAAAAATCCCAACAACTAACAGTGACAATGGAATCAAGCTAAATGGAACACAAGTAATTGAGCCTAGTAGTACCAAAAAGGGTCAGAAGAATGAGGCAAGGAAGAAAGGAAAGTTCTTGAAAGCAAGAGTATTGTCAAGAGTATTCTCAGAGGACTATGAGAGAGTAAGAAGAAGAATATTAGATCCCAGGGGACAAGCCATTCACCGTTGGAACAAGATTTTCTTGGTAGCATGTTTAGTTTCTTTGTTTGTGGACCCTTTGTTCTTTTATTTGCCACTAGTTCGAGATGAAGTGTGCATTGATATTGGAATAGCACTTGAAGTTATCCTCATAATCATAAGATCATTGGCAGATGTATTTTACATGATTCAGATTCTCATGAAGTTTCATACAGCTTATGTTGCTCCTTCTTCCCGGGTATTTGGGAGAGGAGAACTTGTTATAGAGTCTTCTAAGATAGCAACTAGGTACATGCGCAAAGGTTTCTGGTTAGACTTTGTTACTGCCCTGCCCCTTCCTCAGGTGTTAATTTGGATTGTGATCCCCAATCTTGGAGGTTCAACCATAGCAAACACAAAAAATGTCCTTCGTTTCATCATCATTTTCCAATATTTGCCAAGGCTATTTCTGATTTTTCCACTTTCATCACAAATTGTAAAAGCTACTGGGGTTGTGACGGAAACAGCATGGGCTGGTGCTGCTTACAACTTGATGCTTTACATGTTGGCTGGCCATTTTGTAGGTGCTTGCTGGTATCTTCTATCAATTGAACGACAAGAAGCATGCTGGAGGAGTGTCTGCGAGCTGGAGAAGTCATCTTGTCAATATGGATTCTTTGACTGCAACATGGTTAAAGATTCCCTCAGGGTCTCCTGGTTTATGACAAGTAATGTCACAAATTTATGTTCAGCAAATGCCAACTTTTATCGGTTTGGTATATACGGTGATGCTGTGACATCTAAAGTTACAACCTCAGCATTTTTTAATAAGTACTTCTTTTGTCTGTGGTGGGGCCTAAGGAATTTGAGTTCTTTGGGACAAGATCTTCTTACTAGCACTTATGTTGGAGAAATAATCTTCGCCGTTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCATTGCTGATTGGTAATATGCAGACTTATCTCCAATCAACAACTGTCCGCTTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAGCTACCTCCAGAACTAAGACAATCTGTGCGTAAATATGATCAATATAAGTGGCTGGCTACACGAGGAGTTGATGAAGAAGCACTTCTCAAAGGACTTCCATTGGATCTTAGGAGAGACATCAAGCGCCACCTTTGTCTTGAACTAGTTCGACGAGTGCCATTGTTTGACCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTAAAGCCTGCATTATGCACTGAGAGCACATATCTAGTTCGTGAGGGTGATCCAGTGAATGAGATGCTATTCATAATTAGAGGGCATCTTGATTCTTACACAACCAATGGAGGCCGCACTGGTTTCTTCAACTCATGCCGCATTGGACCAGGTGATTTCTGTGGTGAGGAACTTTTAACGTGGGCCTTAGATCCACGACCAAGTGTGATACTTCCTTCTTCCACTCGAACAGTTAAGGCCATCTCAGAAGTAGAAGCCTTTGCACTCATAGCAGAAGATTTAAAGTTTGTTGCATCTCAGTTTAGAAGACTACATAGTAAGCAACTTAGGCACAAGTTCAGGTTTTACTCACACCAATGGAGAACGTGGGCTGCATGTTTCATACAAGCAGCATGGAGAAGGCACAAGAAACGAAAGGAAGCTGCTGAACTAAGGGCAAGGGAGAATCATCACTATGTAGCTGAGCCTGAAACACCAAAGTATGTGTATGCAACAAGGAGCACTAGGAAGGGAGTTGTCAGCACTTTGCAGAAACCAGCAGAACCAGACTTTTCTGTTGATGAATAA 2052 0.4137 MASVNSRFLSFPDDPELAKIPTTNSDNGIKLNGTQVIEPSSTKKGQKNEARKKGKFLKARVLSRVFSEDYERVRRRILDPRGQAIHRWNKIFLVACLVSLFVDPLFFYLPLVRDEVCIDIGIALEVILIIIRSLADVFYMIQILMKFHTAYVAPSSRVFGRGELVIESSKIATRYMRKGFWLDFVTALPLPQVLIWIVIPNLGGSTIANTKNVLRFIIIFQYLPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLAGHFVGACWYLLSIERQEACWRSVCELEKSSCQYGFFDCNMVKDSLRVSWFMTSNVTNLCSANANFYRFGIYGDAVTSKVTTSAFFNKYFFCLWWGLRNLSSLGQDLLTSTYVGEIIFAVVVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPPELRQSVRKYDQYKWLATRGVDEEALLKGLPLDLRRDIKRHLCLELVRRVPLFDQMDERMLDAICERLKPALCTESTYLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKEAAELRARENHHYVAEPETPKYVYATRSTRKGVVSTLQKPAEPDFSVDE* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00966 683 CDD CAP_ED 480 611 IPR000595 -
Rops3g00966 683 MobiDBLite consensus disorder prediction 19 51 - -
Rops3g00966 683 SMART cnmp_10 480 611 IPR000595 -
Rops3g00966 683 FunFam Cyclic nucleotide-gated ion channel 1 407 471 - -
Rops3g00966 683 Gene3D Jelly Rolls 478 598 IPR014710 -
Rops3g00966 683 MobiDBLite consensus disorder prediction 20 43 - -
Rops3g00966 683 Gene3D Helix hairpin bin 407 471 - -
Rops3g00966 683 Pfam Ion transport protein 88 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops3g00966 683 PRINTS EAG/ELK/ERG potassium channel family signature 393 402 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops3g00966 683 PRINTS EAG/ELK/ERG potassium channel family signature 143 152 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops3g00966 683 PRINTS EAG/ELK/ERG potassium channel family signature 349 366 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops3g00966 683 PRINTS EAG/ELK/ERG potassium channel family signature 375 386 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops3g00966 683 PRINTS EAG/ELK/ERG potassium channel family signature 260 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops3g00966 683 PRINTS EAG/ELK/ERG potassium channel family signature 443 450 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops3g00966 683 Gene3D - 90 404 - -
Rops3g00966 683 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 55 679 - -
Rops3g00966 683 SUPERFAMILY Voltage-gated potassium channels 80 402 - -
Rops3g00966 683 ProSiteProfiles IQ motif profile. 616 645 IPR000048 GO:0005515
Rops3g00966 683 ProSiteProfiles cAMP/cGMP binding motif profile. 480 577 IPR000595 -
Rops3g00966 683 FunFam Cyclic nucleotide-gated ion channel 1 478 596 - -
Rops3g00966 683 SUPERFAMILY cAMP-binding domain-like 410 606 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00966 Rops-Chr3 12369016 12373763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00966 53 682 Ion Channels AT2G28260 77.795 0.0 1046
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00966 K05391 - gmx:100811847 1159.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00666 7 8807851 8811607 Rops3g00966 3 12369016 12373763 PCT