Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00958 ATGTCATCTGCTACGGATAATGCTAATATGAAGGATTGTTGGTTTTTTGACAAGAATTTTAGTGGTTTGTCAGATGAGATTTTTGACGATGTAATTGAGTTTTTTGATTTGCCACTAGAAGATGTGGAAACTGATGTTGTGGAAGAAGATTGGAATGCTCAATTTAAACACCTTGAAGAGCCATCTCTTGGTGTTTTTTCAGTATCTTCATCAGGGCTTTGTGGCAAAACTCAAAATGAGAATCCAAAACTTGGGAGGAGTTTCTCTGCTTCTCTACCAGAGACTGCTGGACCTACATATGGCAAATCTATTCCCATCCAGAATGTCTCTTTTAATGGAAAAGATTTGAACCAATTCCAAACCTACAGCCCAGTTTCTGTTATTGAAAGCAGTAGTTCTTCCTCGGTTGAGAACTCCAACTTTGAGTTACCTGTCATCCCAGCAAAGGGTCCTCGAGGCAAACGCCGACGTCTCTCAAGTTTCAGCCTGCTATTCTCAATTCCTTTCATATCTACTTCACCAGAATTTCAAAAATATCAAAGGACAGCTGTCTATGCATCAGATTTAGAAACACAGCCTGCTGGGAAATTATTGAGCAGAGTAAAAAAGAAGCAGAGGAAAAAGGATCTCTCCCGGATACCTGATAATATTGAGATTAAGAGATCCTTATCAAAGGAGACAGTTGCCTCCAGAAAATGCATGCATTGTGAGGTGACAAGTACACCACAATGGAGAGAGGGACCTATGGGTCCTAAGACCCTATGCAATGCTTGTGGGGTTCGATACAGGTCTGGCCGGCTCTTTCCTGAATATCGGCCTGCAGCTAGCCCTACTTTTGTGGCATCATTGCACTCAAACTCTCACAAGAAGGTCATAGAAATGAGGAACCGAGCCACCCAGTTGACTGTTAGAGGCATTCAGGTATTGAAAATTCTGAGAGGAAGAGAATGGAATAAAAGTGGGGTTGAAGCAGAGGCAAAATGGGATAAATGGAGCAAGAATCCTTGA 1008 0.4187 MSSATDNANMKDCWFFDKNFSGLSDEIFDDVIEFFDLPLEDVETDVVEEDWNAQFKHLEEPSLGVFSVSSSGLCGKTQNENPKLGRSFSASLPETAGPTYGKSIPIQNVSFNGKDLNQFQTYSPVSVIESSSSSSVENSNFELPVIPAKGPRGKRRRLSSFSLLFSIPFISTSPEFQKYQRTAVYASDLETQPAGKLLSRVKKKQRKKDLSRIPDNIEIKRSLSKETVASRKCMHCEVTSTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNSHKKVIEMRNRATQLTVRGIQVLKILRGREWNKSGVEAEAKWDKWSKNP* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00958 335 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 230 290 - -
Rops3g00958 335 PANTHER GATA TRANSCRIPTION FACTOR 43 298 - -
Rops3g00958 335 SMART GATA_3 227 277 IPR000679 GO:0006355|GO:0043565
Rops3g00958 335 CDD ZnF_GATA 232 279 IPR000679 GO:0006355|GO:0043565
Rops3g00958 335 Gene3D - 224 302 IPR013088 GO:0006355|GO:0008270
Rops3g00958 335 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
Rops3g00958 335 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
Rops3g00958 335 FunFam GATA transcription factor 224 308 - -
Rops3g00958 335 Pfam GATA zinc finger 233 266 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00958 Rops-Chr3 12223707 12227244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00958 17 297 C2C2-Gata Transcription Factor Family AT1G08010 39.310 3.71e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops3g00958 GATA 8.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00958 - - gmx:100815208 363.614