Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00957 ATGAAGGAAGGTGAGAAGAGCTTGGATCCACAACTATGGCACGCGTGTGCAGGTGGCATGGTTCAGATGCCTCAAGTGAACTCAAAAGTTTTCTACTTTCCACAAGGGCATGCAGAACACGCTCACACCAACGTTGATCTGAGGGTTCCACCATTGATCCTATGCAGGGTTGCTGATGTGAAATTCATGGCAGACCCAGAAACCGATGAAGTCTTTGCCAAGATAAGTCTTGTTCCTTTGAGAAATTCAGAGCTTGGTTATGATGAAGAAGGTGGTGAAGTGTTGGAAAATTCAGAAAAGCCTGCATCTTTTGCAAAGACGTTAACTCAATCTGATGCTAACAATGGTGGGGGGTTCTCAGTTCCAAGGTACTGTGCTGAAACCATTTTTCCTCGGCTTGATTACTCGGCTGAACCGCCGGTTCAGACGGTGGTAGCCAAGGATGTTCACGGTGAGCTTTGGAAGTTCAGGCATATATATAGAGGCACACCACGTAGGCACTTGCTAACCACAGGGTGGAGCAGTTTTGTGAACCAGAAGAAACTTGTTGCTGGGGATTCTGTGGTGTTTCTGAGGGCTGAAAATGGGGAACTATGTGTTGGAATTCGTAGAGCAAAGAAAGGAATTGGTGGTGGTTCTGAAGCCTCATCTAGGAATTGTGGTATTGGACCTTATGGGGCATTTTCTTTTTTGTTAAGAGAGGAGAACAAGTCATTGAGGAATGGTTGTGTTGGTGGTAATTTGAGTGGAAGAGCAAAAGTGAGGCCTGAAGATGTTATGGAAGCTGTGACACTTGCTGCTAGTAACCAGCCATTTGAAGTTGTTTATTACCCAAGAGCAAGTACTCCTGAGTTTTGCATTAAGGCTTCAGCTGTGAGGGCTTCTATGAGGATTCAATGGTGTTCTGGGATGAGGTTCAAGATGCCCTTTGAAACTGAGGACTCTTCAAGGATAAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTGTTGATCCTATCCGCTGGCCTAATTCCCCCTGGCGCCTTCTTCAGGTTACTTGGGATGAGCCAGATTTACTACACAATGTAAAGCGTGTTAGTCCTTGGTTGGTTGAATTGGTATCAAACATGCCAGCCATCCATTTCACACCCTTCTCTCCACCAAGGAAGAAGCTGCGGTTTCCACAACACCCCGAATTTCCCCTTGATGTTCAATTTCCAACACCAACTTTTTCAGGCAACCAGCTTGGGCCTAACAACCCCTTGTGTGGTTTATCTGATAATGCCCCTGCAAGCATACAGGGAGCCAGGCATGCTCAAATTGGAATTTTTCAATCAGATCTCAACCTTAACAATAAACTGCATTTGGGGTTGCTTCCAACTAATATCCAGCAGCTTGATGTGCATGGTGGGATTTCAAATGGTGGCAACATGACCAACCATGATAAGAGCAAAGAAAGCTTGTCATGCTTGCTTACCATGGGAAAATCTAATAAGAGTTTGGAGAAATCTGATGATGTTAAGAAACACCAATTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATTTCTAGAAGCTGTTCTAGGGATGCCTCACTGGATGAGAATAAGGACAAAGAGAAGTGCTTTTTGGATGACTCCCAATCTGCACTTTCACCAGGTAAAGCTTCTACTGCTGAATTTTCTTGGCAACTTGGCTTGGATACTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTAGGAAGGACACTAGACCTATCAAGTCTTGGTTCTTATGAAGACCTGTATAGGAGACTGACCAACATGTTTGGCTTAGAAAGATCTGAGATGTTGAACCATGTGTTCTACCGTGATGCAACAGGTGCTATTAAACAAATTGGAGAAGAACCCTTCAGTGACTTCAAGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAGGCAACAAAAATATTAGAAGGGCCTGGATTACAGGAACTCGGAATGGTGAACATGGACTGAATGCATCAAACAAAACAGGTCCTCTAAGCATATTTGCTTAA 2034 0.4395 MKEGEKSLDPQLWHACAGGMVQMPQVNSKVFYFPQGHAEHAHTNVDLRVPPLILCRVADVKFMADPETDEVFAKISLVPLRNSELGYDEEGGEVLENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGELCVGIRRAKKGIGGGSEASSRNCGIGPYGAFSFLLREENKSLRNGCVGGNLSGRAKVRPEDVMEAVTLAASNQPFEVVYYPRASTPEFCIKASAVRASMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNMPAIHFTPFSPPRKKLRFPQHPEFPLDVQFPTPTFSGNQLGPNNPLCGLSDNAPASIQGARHAQIGIFQSDLNLNNKLHLGLLPTNIQQLDVHGGISNGGNMTNHDKSKESLSCLLTMGKSNKSLEKSDDVKKHQFLLFGQPILTEQQISRSCSRDASLDENKDKEKCFLDDSQSALSPGKASTAEFSWQLGLDTGHCKVFLESEDVGRTLDLSSLGSYEDLYRRLTNMFGLERSEMLNHVFYRDATGAIKQIGEEPFSDFKKTAKRLTILTDSGNKNIRRAWITGTRNGEHGLNASNKTGPLSIFA* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00957 677 ProSiteProfiles PB1 domain profile. 565 645 IPR000270 GO:0005515
Rops3g00957 677 FunFam Auxin response factor 102 206 - -
Rops3g00957 677 Pfam Auxin response factor 262 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops3g00957 677 Pfam B3 DNA binding domain 104 205 IPR003340 GO:0003677
Rops3g00957 677 Gene3D - 300 373 - -
Rops3g00957 677 SMART B3_2 104 206 IPR003340 GO:0003677
Rops3g00957 677 CDD B3_DNA 103 204 IPR003340 GO:0003677
Rops3g00957 677 ProSiteProfiles B3 DNA-binding domain profile. 104 206 IPR003340 GO:0003677
Rops3g00957 677 Gene3D - 564 650 - -
Rops3g00957 677 Gene3D - 102 206 IPR015300 -
Rops3g00957 677 FunFam Auxin response factor 300 373 - -
Rops3g00957 677 SUPERFAMILY DNA-binding pseudobarrel domain 98 205 IPR015300 -
Rops3g00957 677 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 644 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00957 Rops-Chr3 12190428 12194065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00957 1 649 B3 DNA Binding Superfamily AT4G30080 58.544 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops3g00957 B3 2.8e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00957 - - gmx:100814686 1136.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00675 7 8933578 8937161 Rops3g00957 3 12190428 12194065 PCT