Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00953 ATGGCTATGGCTGTGGCTCAACACAGAGAAAGTAGCAGCAGTGGCAGCATTGAGAAGCACCTTGATGCTTCTGGGAAATATGTGAGGTACACTGCTGAACAAGTTGAGGCTCTTGAAAGGGTTTATGCTGAGTGCCCTAAGCCTAGTTCACTGAGAAGGCAACAATTGATCCGAGAATGCCCCATTCTTTCTAACATCGAGCCAAAGCAAATCAAGGTTTGGTTCCAGAATCGAAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCTCGGCTTCAGACTGTGAACCGGAAACTGTCAGCAATGAACAAGTTGTTGATGGAGGAAAATGATAGGTTACAGAAACAAGTGTCACAACTTGTGTGTGAGAATGGGTATATGAAGCAGCAATTACATACTACATCAGCAGCAACTACTGATGCTAGTGGTGATTCAGTGGTTACTACTCCTCAACATAACATGAGAGATGCTAATAACCCCGCTGGACTCCTATCAATTGCAGAGGAGACCTTGACAGAGTTCCTTTCAAAGGCTACTGGAACTGCTGTAGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACAAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTTCGAGAGTGTCGGAGCCTAGAAGTTTTCACAATGTTTCCTGCAGGAAATGGAGGAACCATTGAACTTGTTTACACTCAGACTTATGCTCCAACGACACTGGCTCCTGCCCGGGATTTCTGGACTCTTAGATACACTACAAGTTTGGATAATGGCAGTCTTGTGGTTTGTGAGAGGTCCCTGTCTGGTTCTGGCACGGGCCCTAATCCAGCTGCTGCTGCTCAGTTTGTAAGGGCTGAAATGCTCCCTAGTGGCTACTTGATTCGACCATGTGATGGTGGAGGGTCAATCATCCACATTGTAGACCACCTAAATCTAGAGGCATGGAGTGTGCCAGAAGTGCTGCGCCCACTTTATGAATCATCAAAGGTGGTAGCTCAAAAAATGACAATTGCGGCACTTCGCTATATTAGACAAATAGCTCAAGAAACAAGTGGTGAAGTGGTATATGGATTGGGTAGACAGCCTGCTGTTCTGCGAACTTTTAGCCAAAGATTAAGCAGAGGCTTCAATGATGCTGTAAATGGATTTAATGATGATGGGTGGTCTGTACTGAACTGTGATGGTGCTGAGGATGTAATTATTGCAGTTAACTCAACCAAAAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCTTACATTCCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTGCTCCAAAACGTCCCTCCTGCAGTATTGGTTCGTTTTCTAAGGGAGCACCGCTCAGAGTGGGCTGATTTTAATGTTGATGCTTATTCTGCTGCATCACTGAAAGCTGGCACCTATGCCTATCCAGGGATGAGGCCTACAAGATTCACTGGCAGTCAAATAATCATGCCTCTCGGCCATACAATTGAACATGAAGAGATGCTTGAAATTGTTAGGCTTGAAGGCCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAGATATGTAGTGGAATTGATGAGAATGCTGTAGGGGCTTGTTCTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCAGACGATGCTCCATTGGTTCCTTCTGGTTTCCGCATCATCCCATTGGATCCAAAACCAGGTGATAAAAAGGATGCATTGACTTCAAATAGAACATTGGATTTGACATCTGGTCTTGAAGTGGGCCCAGCAACAGCTCAGGGTGCAGATGCATCATCAAGTCATAACACACGATCAGTGTTAACTATCGCCTTCCAGTTTCCTTTTGACAGCAGTTTGCAAGACAATGTCGCAATCATGGCACGTCAATATGTTCGTAGTGTGATTTCGTCTGTGCAGAGGGTTGCCATGGCTATATCTCCATCTGGTATAAACCCAGCTGTTGGAGCAAAACTTTCTCCTGGTTCTCCAGAGGCAGTTACACTAGCTCACTGGATCTGCCAGAGTTATAGTTACTATTTGGGGACAGACTTACTGAGATCAGATTCTCTTGTTGGTGACATGATGCTGAAACATCTGTGGCATCATCAGGATGCCATTCTATGCTGTTCACTTAAGTCACTGCCAGTGTTCATCTTTGCAAATCAGGCTGGCCTCGACATGTTGGAAACAACTCTAGTGGCTTTACAAGACATCACATTGGATAAAATATTTGATGAGTCTGGACGCAAGACATTGTGTGCAGACTTTGCTAAGTTAATGCAACAGGGGTTTGCTTATCTGCCAGCTGGGATCTGCATGTCCACGATGGGGCGGCATGTTTCATATGAACAAGCCATTGCATGGAAAGTGCTTACTGCAGAAGATAACACTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGA 2532 0.4479 MAMAVAQHRESSSSGSIEKHLDASGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVCENGYMKQQLHTTSAATTDASGDSVVTTPQHNMRDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRPSWFRECRSLEVFTMFPAGNGGTIELVYTQTYAPTTLAPARDFWTLRYTTSLDNGSLVVCERSLSGSGTGPNPAAAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEDVIIAVNSTKNLSGTSNPASSLTFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGTYAYPGMRPTRFTGSQIIMPLGHTIEHEEMLEIVRLEGHSLAQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLVPSGFRIIPLDPKPGDKKDALTSNRTLDLTSGLEVGPATAQGADASSSHNTRSVLTIAFQFPFDSSLQDNVAIMARQYVRSVISSVQRVAMAISPSGINPAVGAKLSPGSPEAVTLAHWICQSYSYYLGTDLLRSDSLVGDMMLKHLWHHQDAILCCSLKSLPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKTLCADFAKLMQQGFAYLPAGICMSTMGRHVSYEQAIAWKVLTAEDNTVHCLAFSFINWSFV* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00953 843 Coils Coil 91 122 - -
Rops3g00953 843 SMART HOX_1 23 89 IPR001356 GO:0003677
Rops3g00953 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 23 843 IPR044830 GO:0003700
Rops3g00953 843 SMART START_1 164 374 IPR002913 GO:0008289
Rops3g00953 843 Pfam START domain 165 372 IPR002913 GO:0008289
Rops3g00953 843 Gene3D - 199 381 IPR023393 -
Rops3g00953 843 CDD homeodomain 26 86 IPR001356 GO:0003677
Rops3g00953 843 CDD START_ArGLABRA2_like 159 375 - -
Rops3g00953 843 CDD bZIP 78 117 - -
Rops3g00953 843 Pfam Homeodomain 26 84 IPR001356 GO:0003677
Rops3g00953 843 SUPERFAMILY Bet v1-like 164 376 - -
Rops3g00953 843 FunFam Homeobox-leucine zipper protein REVOLUTA 26 81 - -
Rops3g00953 843 Pfam MEKHLA domain 699 842 IPR013978 -
Rops3g00953 843 Gene3D - 19 92 - -
Rops3g00953 843 SUPERFAMILY Homeodomain-like 23 88 IPR009057 -
Rops3g00953 843 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289
Rops3g00953 843 ProSiteProfiles 'Homeobox' domain profile. 21 85 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00953 Rops-Chr3 12127602 12134405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00953 1 843 Homeobox Transcription Factor Family AT5G60690 83.628 0.0 1469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops3g00953 START 1.4e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00953 K09338 - gmx:100804870 1611.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00953 3 12127602 12134405 Rops3g00953 3 12127602 12134405 ECH