Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00944 ATGAGTTATGAGGAAAAGCCTGGGAGTGAGGAACATGATGCAGGTTCTTGCAGAAGAACAGTTTCTCTTCCTGTTCACAAGGTTGATGATCAAATGGGAATAACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAGAATCTTATCCTTGAAATACCCTCAAGGACACAAGACGAGTGTTCCCAAGATTTTGTTGCAATCAAAATGCCACTGACACCAAGTCCTACTCCCAATCGAACTCCCAAGAGAGTGAATTTTCTTGTGACTTCTCACTCTGTTGATGCTCCAACAAATAATTCTCCTGGGCCTTCAACATCAAAAGGAAAATCATCCATAAGAAGCCTCTTACCAAAATTGAGCTTCAGGTATCGGACACCAGCAGATATTGAAAAGGCTACTACAGCAGCTCCAGAAGTTTCCTCTTCAAGCATTCGAGAAAAGCCTTCAATCTCAAGATCATTGTCCCTTTCTAAGATATTTACTCCTAGGATTAAGAGAACTTCATCATTGCCAGTAGAAGAAATTGGACATTCAAACACAGAATCTGCTCATGGTGGAAGCGTTGGTGGTTCTCTAAATAAGAGAGAGACTCAGCGAAAGATAGCTCGTTCTCTTTCAGTGCCTGTCAACAACAAAGAAAAGAGCATTAGGAGGATGGATTCGTTTTTCCGTGTTGTTCCTTCAACTCCTCGAGTAAAGGAAGGAAATGAATCATTGAGCACATCCCCAGCAAAGGATAATGAAAATGAAGATGCTGATGGTGAAGATATTGCTGAAGAAGAGGCTGTGTGTAGAATCTGTCTGGTTGAATTATGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCACTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTACCTGTCACTCTATTACGGATTCAAAGTGTTCGAAATCGGAATTCTGGAGCAAGTAGGTTTCAGATGGAAGACGTAAATGGTTACAGGGTTTGGCAGGAAGTCCCGGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTGCTCTCCTCTATGACATCATCAACCATGGTGAAGAGCAGATTCATCTGGTTTTATGCATCTGTCCAGTTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTGTCAATTCTTCTTGCAACATTCGCTGGTTTTGGTGCGGTGATGAGTGGGAGTTCAATTCTTGTAGAGTTTTTTAGATGGAGAAGGAGATGGCAGGCTTTATCAGAGCAGCAGCGTGGCTCTCAACTGATGAATCAAACAGGACAACACCCTCAAACTGTGAACACGCCACGTTCAGGCCCTCCCAACCACAGTCAACCTGTGATGCAAAATCAACAGAACTCAAATCAGAATTGA 1542 0.4319 MSYEEKPGSEEHDAGSCRRTVSLPVHKVDDQMGITEETTHVPPRKRQNLILEIPSRTQDECSQDFVAIKMPLTPSPTPNRTPKRVNFLVTSHSVDAPTNNSPGPSTSKGKSSIRSLLPKLSFRYRTPADIEKATTAAPEVSSSSIREKPSISRSLSLSKIFTPRIKRTSSLPVEEIGHSNTESAHGGSVGGSLNKRETQRKIARSLSVPVNNKEKSIRRMDSFFRVVPSTPRVKEGNESLSTSPAKDNENEDADGEDIAEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNSGASRFQMEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWFYASVQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGAVMSGSSILVEFFRWRRRWQALSEQQRGSQLMNQTGQHPQTVNTPRSGPPNHSQPVMQNQQNSNQN* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00944 513 MobiDBLite consensus disorder prediction 1 42 - -
Rops3g00944 513 SMART ringv_2 264 313 IPR011016 GO:0008270
Rops3g00944 513 MobiDBLite consensus disorder prediction 1 17 - -
Rops3g00944 513 SUPERFAMILY RING/U-box 261 316 - -
Rops3g00944 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 320 IPR013083 -
Rops3g00944 513 ProSiteProfiles Zinc finger RING-CH-type profile. 257 319 IPR011016 GO:0008270
Rops3g00944 513 CDD RING_CH-C4HC3_MARCH 265 313 - -
Rops3g00944 513 MobiDBLite consensus disorder prediction 474 513 - -
Rops3g00944 513 MobiDBLite consensus disorder prediction 173 195 - -
Rops3g00944 513 MobiDBLite consensus disorder prediction 233 255 - -
Rops3g00944 513 MobiDBLite consensus disorder prediction 92 114 - -
Rops3g00944 513 PANTHER OS02G0165000 PROTEIN 32 480 - -
Rops3g00944 513 Pfam RING-variant domain 265 312 IPR011016 GO:0008270
Rops3g00944 513 MobiDBLite consensus disorder prediction 171 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00944 Rops-Chr3 12018755 12023995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00944 222 319 C3H Transcription Factor Family AT2G37950 38.000 5.82e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00944 - - gmx:100788108 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00688 7 9064559 9068786 Rops3g00944 3 12018755 12023995 PCT