Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00942 ATGGCGGAACCTCTCGTAAACACTGAACTTCCCTCTAAAACCCTAGACCCTATCGACGGTCACGATTCCAAGTTCGAACCTCATCAAACGGCTGGGAAAGAATCTCAAATCCAACAAGAAAGTGACGACGTCGTTTCGACCGAGAAAAGGAAGAGAGACGACGACGGAGACGGCGATGCCGGCGGTTCGCTTCATCCGTTGTGGAAGACCAGCCTTTGTTCCTACTTCAGGCGACACGATGGCTCCTGCAGCCACGGCAGCGCGTGTCGCTACGCTCACAGCGAGGAGGAGCTCCGTCCTCGTCCGGACAACACGTGGGACCCGACGTCGGAGCGAGCGAAGAAGGCGTTGAAAACCGAGACCGGTGAGAAACGCTGCGTTTCAGAGGGTGTGATGATGACAGAGGCCGTCAACGACGACGAAGACGTCGACGGCGGCGATGACGGTTGCGCCTCCAATCACACTCTCAGCAAATGCTTGGTTCATTTGCCGAGGAAATGGAGCTCCGAGAATTTGAGGAATTTCCTCAACGAAGAGGGTATAGTTTTTAAGTATGCGAAGAAAAAGAAAGGTATGATGGTTGGTTTCGTTACTTTTGAAGATGAAGAACAAATGAAGATTTCATCAAAGGATTTAGAAGGAAAATCAATTGGCAACAAAAAGTTAAAGGTTGCTGATGTCATTCCTCGATCATTTGAGAAGAAAAATAACTCCAATGTTACTGCATTAGATAAGGAGGATACAGGGGACAATGTTCCTTCAAATGGGGTATTGGGTGCTGAAACAAATGATGATAATTTGGCAGTTGATGGTTCTGTGTCAAAGACAAGAAGCTTGCGTGATGTTGTGACTCCTCTAGCTCATATGGTCTATGATGACCAGTTGGAGCAGAAAAAAGGCTCTCTCATGCAGATTCTCAAAAGACTTACTAGAAATGCTCGTAAAGCTTGTCCAACTGGCATTCCTCTTCCTGAGTGGATTCACAAGTCTAGGGAAATAGGTGGTCTTCCATGCAAACTAGAGGGTATTATCGCATCTCCAATTGTAAATGGATATCGTAATAAATGTGAATTTTCAGTTGGATATTCTCTGGAAGGCAAAGTAACAGTGGGCTTCATGCTTGGAAACTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCTGTGGACTGCCCAAATGTTTCTACGAGTGCTGGCAAATATGCTGGTATCTTTCAGGAATTTCTGCAGCATACTGATTTACCAGTTTGGAACAGATTTAAAAATAGTGGATTTTGGCGTCAATTGACGGTTCGAGAAGGGAGGACAAATGGGAATGTTGTTGATGCTGAAACTTTTGACGGTATTGCAGAGGTCATGCTTATTGTACAGGTTTCTACTGCAAGCTTTGATGATGCACAAGTAGCCGCTGAATTTAAGAGGCTTGCTCAGGCATTTTTCGTAGGAGCTACTTCACAATGTCCAGCATTGCCCCTTACTGCTCTGGTTGTTCAGGATCACCAAGGAATATCTAATGTAGCACCCACTGATGCACCACTGCACTACCTTCCCATTCCTAAAGCAGTCGGTGGTCCTGAGATGGATGAAAACAATATTGCCATGGATGTAAGAATCCATGATTATATCAGCAATTTACGGTTCTCAATATCTCCAACAGCATTTTTTCAGGTTAACACCCTTGCTGCTGAGAAGTTATACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACATTGCTATTTGATATATGCTGTGGAACAGGAACAATTGGCCTAACATTAGCCCATCGAGTTGGTATGGTGATTGGGATTGAAATGAATGCTTCTGCTGTATCTGATGCTCATAGGAATGCTGAGATCAATGGCATAAAAAACTGTAGATTTATATGTTCAAAGGCAGAGGATGTGATGGGATCTCTGTTAAGGGAATACCTAAATGACCCTAAGGAACAAGTTGATGATCCTAATATCTCTGGAGGTGGCAATGACATTAATGAGGATAGTGCCTGCCCAGAGCCTAAAAATGGTGAAGTGGCATCTCATTGTTTGGAAAATAACAATGCAGAAGTTGGAAGTGAGGTTCAGAAGGGTAGCACTTCTGAAAATGGGAATACTTCCATGCAACAGTTTAAAAATGTTGTTGCTATTGTTGATCCTCCACGTGCAGGACTTCATCCAACTGTGATCAAAGCTTTAAGAACTCATCCACGCTTGCGCAGGCTTGTTTACATATCCTGTAATCCTGAAAGTTTGGTGGCAAATGCCATTGAGCTTTGTACGCCATCCCCCATAAAAATTGAGAAAGGAAATAAAGACAACAGAGGATGGAGAACCAGGAGCAGTGCTGGTCTAGCACGGCATAGGGCTAAGTCTATGCCCATCTCAGAGGCCTTCCAACCTATCAAAGCCATGGCTGTTGATCTTTTTCCACATACTCAACACTGTGAATTGGTTATGCTTCTTGAGAGTGGTGAATGTTAG 2481 0.4454 MAEPLVNTELPSKTLDPIDGHDSKFEPHQTAGKESQIQQESDDVVSTEKRKRDDDGDGDAGGSLHPLWKTSLCSYFRRHDGSCSHGSACRYAHSEEELRPRPDNTWDPTSERAKKALKTETGEKRCVSEGVMMTEAVNDDEDVDGGDDGCASNHTLSKCLVHLPRKWSSENLRNFLNEEGIVFKYAKKKKGMMVGFVTFEDEEQMKISSKDLEGKSIGNKKLKVADVIPRSFEKKNNSNVTALDKEDTGDNVPSNGVLGAETNDDNLAVDGSVSKTRSLRDVVTPLAHMVYDDQLEQKKGSLMQILKRLTRNARKACPTGIPLPEWIHKSREIGGLPCKLEGIIASPIVNGYRNKCEFSVGYSLEGKVTVGFMLGNFREGVTAVEEAVDCPNVSTSAGKYAGIFQEFLQHTDLPVWNRFKNSGFWRQLTVREGRTNGNVVDAETFDGIAEVMLIVQVSTASFDDAQVAAEFKRLAQAFFVGATSQCPALPLTALVVQDHQGISNVAPTDAPLHYLPIPKAVGGPEMDENNIAMDVRIHDYISNLRFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFICSKAEDVMGSLLREYLNDPKEQVDDPNISGGGNDINEDSACPEPKNGEVASHCLENNNAEVGSEVQKGSTSENGNTSMQQFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPIKIEKGNKDNRGWRTRSSAGLARHRAKSMPISEAFQPIKAMAVDLFPHTQHCELVMLLESGEC* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00942 826 CDD AdoMet_MTases 582 636 - -
Rops3g00942 826 SUPERFAMILY RNA-binding domain, RBD 162 235 IPR035979 GO:0003676
Rops3g00942 826 SUPERFAMILY CCCH zinc finger 65 100 IPR036855 GO:0046872
Rops3g00942 826 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 285 821 IPR029063 -
Rops3g00942 826 MobiDBLite consensus disorder prediction 650 678 - -
Rops3g00942 826 MobiDBLite consensus disorder prediction 43 60 - -
Rops3g00942 826 Gene3D Vaccinia Virus protein VP39 525 823 IPR029063 -
Rops3g00942 826 MobiDBLite consensus disorder prediction 1 63 - -
Rops3g00942 826 MobiDBLite consensus disorder prediction 15 29 - -
Rops3g00942 826 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 282 824 IPR010280 GO:0006396|GO:0008173
Rops3g00942 826 Pfam tRNA (Uracil-5-)-methyltransferase 707 759 IPR010280 GO:0006396|GO:0008173
Rops3g00942 826 ProSitePatterns RNA methyltransferase trmA family signature 1. 718 750 IPR030390 -
Rops3g00942 826 ProSiteProfiles Zinc finger C3H1-type profile. 67 96 IPR000571 GO:0046872
Rops3g00942 826 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 85 823 IPR045850 -
Rops3g00942 826 SMART c3hfinal6 67 95 IPR000571 GO:0046872
Rops3g00942 826 Gene3D - 63 101 - -
Rops3g00942 826 Gene3D - 159 228 IPR012677 -
Rops3g00942 826 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 68 95 IPR000571 GO:0046872
Rops3g00942 826 Pfam Methyltransferase domain 580 638 IPR025714 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops3g00942 tRNA_U5-meth_tr 9.3e-08 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00942 K15332 - gmx:100777601 1113.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00942 3 12002180 12008179 Rops3g00942 3 12002180 12008179 ECH