Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00938 ATGTTCAATAAGACTCTTTCTTTTGCCAAAGCCATGGGGTGTTGTAATTGCTTTGGGTTCATGAGGAGACGTAACCGTCGAAGAGCTAAGCCTGCCATCAACAATAATGTCTGCCAGGAACCGTTGTTGGATGATGACATTGAAGATGAAGAGTGTTCAGATAATGACGAGGTTACTAATGCCAGTGGAGATGATGGTGAGGCTCGCCCCAAGCGATCGGAGGAAATTTTGAACTTGAGAGTAGAGAATGACATGATTTGTAGGCAGTTTCCTGTTAAGGAGACTTACAAAGTTGTTCGTACCGAGGATAAAAACGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTGGCTCTTTATCGAAGCTCTCTCGATGAAAAACATTATGCAATTAAGGCCTTTCACAAGTCTCATTTACGCAAGCTTCGAGTTGCACCCTCAGAAACTGCCATGACTGATGTTCTACGTGAGGTTTTCATTATGAAAATGCTGGAACATCCTAATATAGTGAATCTCATTGAGGTGATTGATGACCCAGAGTCGGATCACTTCTACATGGTGCTTGAATATGTGGAAGGCAAATGGGTTTGCGAGGGTTCAGGTCCAGCTTGTGGCTTAGGTGAAGAGACTGCTAGAAGATACTTGCGTGATATAGTTTCTGGATTAAAATATCTCCATGCTCATAATATAGTACATGGGGACATTAAACCAGATAATCTGTTGATTACTCATCATGGTACAGTAAAGATAGGGGACTTCAGTGTCAGCCAGGCTTTTGAGGATGACAATGATGTACTTCGACGATCACCTGGCACTCCTGTTTTCACTGCACCTGAATGTATTTTAGGTGTTACCTATCATGGTAAAGCTGCTGATACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGTGATACACTTCAAGATACATATGACAAAATAGTCAATAATCCTTTAGTACTCCCAAATGATATGAATCCGCAATTAAAGAACTTAATAGAACGACTACTTTACAAAGACCCAAGACTAAGGATGACATTGGGTGATGTTGCGGAGGATAGCTGGGTTATTGGAAATGATGGGCCAATTCCTGATTACCTTTGTTGGTGCAAAAGGAAGAGCTTGGAGAGGGAAGACAATAATGAGAGCAAGATGTTTCTTTGA 1218 0.4113 MFNKTLSFAKAMGCCNCFGFMRRRNRRRAKPAINNNVCQEPLLDDDIEDEECSDNDEVTNASGDDGEARPKRSEEILNLRVENDMICRQFPVKETYKVVRTEDKNGNKMINEYIREYKIGSGSYGKVALYRSSLDEKHYAIKAFHKSHLRKLRVAPSETAMTDVLREVFIMKMLEHPNIVNLIEVIDDPESDHFYMVLEYVEGKWVCEGSGPACGLGEETARRYLRDIVSGLKYLHAHNIVHGDIKPDNLLITHHGTVKIGDFSVSQAFEDDNDVLRRSPGTPVFTAPECILGVTYHGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNNPLVLPNDMNPQLKNLIERLLYKDPRLRMTLGDVAEDSWVIGNDGPIPDYLCWCKRKSLEREDNNESKMFL* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00938 405 FunFam Serine/threonine-protein kinase GRIK2 103 403 - -
Rops3g00938 405 FunFam Serine/threonine-protein kinase Ssp1 107 209 - -
Rops3g00938 405 SMART serkin_6 113 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00938 405 Gene3D Transferase(Phosphotransferase) domain 1 212 380 - -
Rops3g00938 405 MobiDBLite consensus disorder prediction 49 71 - -
Rops3g00938 405 Gene3D Phosphorylase Kinase; domain 1 107 209 - -
Rops3g00938 405 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 76 377 - -
Rops3g00938 405 SUPERFAMILY Protein kinase-like (PK-like) 109 382 IPR011009 -
Rops3g00938 405 ProSiteProfiles Protein kinase domain profile. 113 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00938 405 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Rops3g00938 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Rops3g00938 405 Pfam Protein kinase domain 115 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00938 405 CDD STKc_LKB1_CaMKK 119 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00938 Rops-Chr3 11940971 11945804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00938 119 381 CBL-interacting serine-threonine protein kinases AT5G35410 33.840 3.30e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Rops3g00938 Pkinase 6.9e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00938 K00908 - gmx:100789178 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00938 3 11940971 11945804 Rops3g00938 3 11940971 11945804 ECH