Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00937 ATGGACACACGCAGGTCCGAGTTTGATTCTGAGTCAAAGGATTTCTCCGATACGGTGGGGTTTCATGAGTTTCTCTCTCAACGCCGTGCCAACAACCTTCGACTCTTCTCTTTCTCCGACCTTAAATCCGCCACACGTGGCTTCCACAGAACCCTCTTGATTGGCGAAGGAGGCTTTGGTTCTGTCTACAAAGGGGTTCTCAATTCTCATTCTCGTTCACAAATTGAAGTTGCTGTCAAGCAGTTGAATCGTAATGGCCACCAGGGGCATAAGGAGTGGATTAATGAAGTGAATTTATTGGGTGTGATCAAGCATACGAATCTCGTGAGGTTAGTGGGTTACTGTGCTGAAGATGATGAAAGAGGGATTCAAAGACTTTTGGTGTATGAGTTTATGCCTAATAAGAGCTTGGAAGACCATCTTTTGGCTCGTGTCTCGTCAACACCTCTCCCATGGACTACAAGATTGAAAATTGCTCAAGATGCAACTCGTGGTTTGGCATACCTGCATGAAGAAATGGATTTTCAGCTAATATTTCGAGATTTTAAGACATCCAACATCTTGCTGGATGAAGACTTCAATGCCAAGCTTTCTGATTTTGGACTTGCTAGGCAAGGACCCTCGGAAGGATCTGGCTATGTTTCAACAGTAGTTGTTGGTACCATAGGTTATGATGCACCAGAGTATGTTCACACTGGTAAGCTGACTGCTAAGAGTGATGTTTGGAGCTTTGGTGTAGTTCTTTATGAACTCATCACTGGGAGGAGATCCGTTGAAAGAAACCTACCAAGAAATGAACAAAAGCTTTTGGAGTGGATAAGACCTTATGTTTCTGATCCTAGGAAGTTCCATCATATTGTAGACACCAGACTTGAAGGACAATATTGCATCAAGTCGGCTCATAAACTTGCAATCCTAGCAAACAAGTGTCTCATGAAGCAGCCAAAGTCACGTCCAAAAATGAGTGAGGTAAGAATGAAAGATCATCATCAAGAACTGTGTACTTGTGGCCCACAGCTCCCATCCTGTGTAGTTGATTACACTAATTTCCAGCATACAAAGTACAAATAA 1071 0.4304 MDTRRSEFDSESKDFSDTVGFHEFLSQRRANNLRLFSFSDLKSATRGFHRTLLIGEGGFGSVYKGVLNSHSRSQIEVAVKQLNRNGHQGHKEWINEVNLLGVIKHTNLVRLVGYCAEDDERGIQRLLVYEFMPNKSLEDHLLARVSSTPLPWTTRLKIAQDATRGLAYLHEEMDFQLIFRDFKTSNILLDEDFNAKLSDFGLARQGPSEGSGYVSTVVVGTIGYDAPEYVHTGKLTAKSDVWSFGVVLYELITGRRSVERNLPRNEQKLLEWIRPYVSDPRKFHHIVDTRLEGQYCIKSAHKLAILANKCLMKQPKSRPKMSEVRMKDHHQELCTCGPQLPSCVVDYTNFQHTKYK* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00937 356 Pfam Protein tyrosine and serine/threonine kinase 53 325 IPR001245 GO:0004672|GO:0006468
Rops3g00937 356 FunFam Serine/threonine-protein kinase BIK1 18 131 - -
Rops3g00937 356 Gene3D Transferase(Phosphotransferase) domain 1 132 336 - -
Rops3g00937 356 CDD STKc_IRAK 54 324 - -
Rops3g00937 356 ProSitePatterns Protein kinases ATP-binding region signature. 54 80 IPR017441 GO:0005524
Rops3g00937 356 PANTHER OS01G0588500 PROTEIN-RELATED 30 326 - -
Rops3g00937 356 Gene3D Phosphorylase Kinase; domain 1 22 131 - -
Rops3g00937 356 ProSiteProfiles Protein kinase domain profile. 48 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00937 356 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 132 332 - -
Rops3g00937 356 SUPERFAMILY Protein kinase-like (PK-like) 29 325 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00937 Rops-Chr3 11917107 11918177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00937 31 324 Glycoside Hydrolase AT3G07070 50.842 2.45e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops3g00937 PK_Tyr_Ser-Thr 9.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00937 - - gmx:100305425 550.821