Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00919 ATGATGTCTGAAGAAACCTTTTCTGCTTCTTCCAACACCATGAGAACCACTTTGGTTCATGTTCAAGACCCAAACTCAAACTCAAACCCTAATCCTATACCTAATCCAAACCCAGCTAAGAAAAAGAGAAATCTACCCGGTACACCAGATCCAGATGCAGAAGTGATAGCTCTGTCACCAGAGTCCTTGATGGCAACGAACCGTTTCATATGTGAAATCTGCAACAAGGGTTTCAAGAGGGACCAGAACTTGCAACTTCATCGACGTGGGCACAATCTGCCATGGAAGCTGAAGCAAAGAACGAACAAAGATCAAGTGAGGAAGAAGGCGTACGTGTGTCCTGAGAAGAGTTGTGTGCACCATGACCCTTGTAGAGCCCTTGGAGATTTGACTGGGATTAAAAAACACTATAGCAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAATGTTCCAAGAAATATGCAGTTCAATCCGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCTTTTTGTGACGCTTTGGCTGAAGAAAGTGCAAGGATAACTACAGTTCCAACAGCTTTAAGTAACTTAAGAAGTGATCATCTAACAAATGCTCAAGCTTCAAGGATCCCTCAGATTTTTCCTGGGTTTCATTCAGAATTTGGTGGTTCAGGGTCAGAACCATTGGGGAATTATTACACTGAAGCAGACCATGGACACAAGATGAGGCTACCACTATGGTTAGACCAAGCCAATTCAAGTGCATTTTCAACAGGAGCAAACTCTGCTTGCACCATGCCTGATCTAGTGCAACAAGCAATGGAAGTGTTTGGGTCACCTTCACAAGCACAGTGGCTGAATTACAGGTACCCAGAAACTTCATTTACTAGTGCAAATAACCTATCTGTGCCTGCGCTACCGACACATGGATTGAAACAAGAACAAGAAGAAAACAAAGGAGACTTGTCGCATAGTGTAATAAGCTCTTTGTACTTGAGTAATCAGAATCCACAGGGAGAACCAACTCACATGTCAGCCACTGCACTGTTACAGAAAGCAGCTCAAATGGGATCTACAAGGATCAACGATAACGCAGCCACCTTCAACAGCAATAATCACAACAACCCCTTTGGTTTAATGAGCTCAAATCTCTCCAGAAACAACAACAACAACAACAATAGCAACATTGTTGAGTTTCAGAAGTTTTTCAAGCAAGCTGAGAACTTGAACGAGTTGGTGAATTTGGAAGCCAGCAACAGCACCAACCTTGGAGGTGAGTATTTATTAAATGATTCAAACAACTCGTTTGTGATTGTGACTGGCACAAAGAATTTGGATCACATGGTAATGCCTGTGGGTAAAGAGACAAACAATCGACCACCATCAATTATGGGCAACCAACTAAATTCAAGCTCAAATAACAAAAACCAAATGGGTTTAACCAGAGACTTTCTTGGTGTTGGAGATGACTCAAGAAACAGACCTTTCTTGCAACAAGACCTTGCTGAATTTAATGCAATGGGATCAGCCACAAACCTGCAGAGCCACTACAGTGGACAACACTACTGCTAG 1623 0.427 MMSEETFSASSNTMRTTLVHVQDPNSNSNPNPIPNPNPAKKKRNLPGTPDPDAEVIALSPESLMATNRFICEICNKGFKRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKAYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVPTALSNLRSDHLTNAQASRIPQIFPGFHSEFGGSGSEPLGNYYTEADHGHKMRLPLWLDQANSSAFSTGANSACTMPDLVQQAMEVFGSPSQAQWLNYRYPETSFTSANNLSVPALPTHGLKQEQEENKGDLSHSVISSLYLSNQNPQGEPTHMSATALLQKAAQMGSTRINDNAATFNSNNHNNPFGLMSSNLSRNNNNNNNSNIVEFQKFFKQAENLNELVNLEASNSTNLGGEYLLNDSNNSFVIVTGTKNLDHMVMPVGKETNNRPPSIMGNQLNSSSNNKNQMGLTRDFLGVGDDSRNRPFLQQDLAEFNAMGSATNLQSHYSGQHYC* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00919 540 Gene3D Classic Zinc Finger 65 92 - -
Rops3g00919 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Rops3g00919 540 SUPERFAMILY beta-beta-alpha zinc fingers 68 166 IPR036236 -
Rops3g00919 540 FunFam protein indeterminate-domain 12-like 48 117 - -
Rops3g00919 540 MobiDBLite consensus disorder prediction 1 52 - -
Rops3g00919 540 Pfam Zinc-finger double-stranded RNA-binding 69 91 IPR022755 -
Rops3g00919 540 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 516 IPR031140 -
Rops3g00919 540 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Rops3g00919 540 MobiDBLite consensus disorder prediction 1 28 - -
Rops3g00919 540 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
Rops3g00919 540 Gene3D Classic Zinc Finger 103 194 - -
Rops3g00919 540 SMART c2h2final6 146 166 IPR013087 -
Rops3g00919 540 SMART c2h2final6 111 141 IPR013087 -
Rops3g00919 540 SMART c2h2final6 69 91 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00919 Rops-Chr3 11751956 11754798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00919 39 214 IDZ Gene Family AT3G45260 86.932 3.24e-115 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops3g00919 zf-C2H2_jaz 2.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00919 K25870 - gmx:100781896 615.15