Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00914 ATGGAAATTGATCTGAACCATGAAATGACTGAGGTTGAGAAGAATGCAATCTGTGATAGGGAATGTGAGAAAGGTGCTTGTGTTTGCTCTTTGTCCTCTTCAACTTGTTCATCTTCTAGTTCCTCTTCACCTCGTGTGTCTTCTTCTTATCTTGAGCTTTGGCATGCTTGTGCTGGCCCTCTCACCTCACTGCCTAAGAAAGGAAATGTGGTGGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCTTCTTTCTCTCCTTTCACCCCAATGGAGATTCCCACCTATGATCTTCAGCCACAGATCCTTTGTAAGGTTGTCAATGTCCAATTACTTGCCAACAAGGAGAATGATGAGGTTTATACAAAAGTTACTTTGCTTCCTCAGGCTGAGTTGGAAGAGATGCATTTGGAGGGCAAAGAACTTGAGGAATTGGGAGCAGATGAAGAGGGAGATGGAGGATCACCTCCAAAATCAACCCCTCACATGTTCTGCAAAACACTGACTGCCTCTGATACCAGCACTCATGGGGGGTTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTCTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTATGCAGTGGAAATTTCGTCATATTTATAGAGGTCAGCCAAGGAGGCACCTACTCACTACTGGCTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTTTAAGGGGTGAAAATGGAGAGCTGAGATTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGGTCTTCCTGAATCAATTGTTGGTAACCAGAACTGTTATCCCAATTTACTTTCTTCTGTGGCAAATGCTATATCCACCAAAAGTCTGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCACGCAGATTTTGTTATCCCCTATCAAAAATATGTTAAAAGCATCAAGAATCCAGTGACCATTGGGACAAGATTCAAAATGAGATTTGAAGTGGATGAATCTCCAGAAAGAAGGTGTAGTGGTGGAATGTTGATTGGAACGAGCGATTTGGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGATACTAATCATCAAGATCGAGTATCTCCATGGGAGATTGATCTTTCTGCTCCTCTACCTCCCTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGAGGACAGGTCTGCAGGTTTCCTCACCCAGTCACCTCATCACTGTAGGAGGCACTGGAATGATGGGCTTTGAGGAGTCTGTAAGATCACCTAAGGTCTTGCAAGGTCAAGAAAATTCGGGTTTTGTGTCACTCTACTTTGGATGTCACACTGAAACCAACCGGCCAGGTTTTGAGATGAGCTCTCCAAATCATCCAAATCTTGCATCAACTGGAGTAGTAGGAAATGTTACCTCTACTGAGCTTATGAGTGTTCACCCTTTCAGTTATGCAGGCTTTATGGAAACCAACAGTTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCGCTGACAGGAAAAGTTGATTTGAACCTTGGTGCTTGGGGAAAGCCCAATGTAGGTTGCACAACTTTCAACCTCCATCAGGCTACCAAACCCAACTTTCAATCTGCATATTTTCCTTATGGGGATATTCATAAAGATGGTCAAGCTAGCATGTTTAGCTCAAAACCAATCAGTTTTCAGAGAGAGAATGTCTCATTTAACACACCATCCACTCAGGCAGGGATCATTAGAAATGAAGTTGGAAGATCAGATCTCCCAAATGAGCATAAGCAGCAGGATAATATATCTGCTGCTGCTTCATTAGGGGCAGCAAATATGAGGATTCCAAATGACAACAATGTCAAGGGAAAGTCAAATACCTGCAAACTATTCGGGTTTCCTTTGTCTGGGGAAACTAGTACCCAAAATGTACAGAACACTGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCGGCTACAATGATCTGCTGAGTGAACTAGAGAGACTATTTGGCATGGAAGGCCTTCTAAAAGATCCTGATAAGGGATGGAGGATCCTGTACACTGACAGTGAGAATGACATAATGGTTGTTGGGGATGACCCTTGGTATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCCAAGAAGAAGTGGAGAAGATGACAATTGGGATGGTAAGTGATGATACTCATAGCTGTTTGGAACAGGCACCAGTGATTATGGAGGCTTCAAAGTCTTCCTCAGTGGGTCAGCCAGATTATTCTCCAACAGTTGTCAGAGTCTAA 2388 0.4322 MEIDLNHEMTEVEKNAICDRECEKGACVCSLSSSTCSSSSSSSPRVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFTPMEIPTYDLQPQILCKVVNVQLLANKENDEVYTKVTLLPQAELEEMHLEGKELEELGADEEGDGGSPPKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGMQWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESIVGNQNCYPNLLSSVANAISTKSLFHVFYSPRASHADFVIPYQKYVKSIKNPVTIGTRFKMRFEVDESPERRCSGGMLIGTSDLDPYRWPKSKWRCLMVRWDEDIDTNHQDRVSPWEIDLSAPLPPLSIQSSPRLKKLRTGLQVSSPSHLITVGGTGMMGFEESVRSPKVLQGQENSGFVSLYFGCHTETNRPGFEMSSPNHPNLASTGVVGNVTSTELMSVHPFSYAGFMETNSFPRVLQGQEICPLKSLTGKVDLNLGAWGKPNVGCTTFNLHQATKPNFQSAYFPYGDIHKDGQASMFSSKPISFQRENVSFNTPSTQAGIIRNEVGRSDLPNEHKQQDNISAAASLGAANMRIPNDNNVKGKSNTCKLFGFPLSGETSTQNVQNTAKRSCTKVHKQGSLVGRAIDLSRLSGYNDLLSELERLFGMEGLLKDPDKGWRILYTDSENDIMVVGDDPWYEFCDVVSKIHIYTQEEVEKMTIGMVSDDTHSCLEQAPVIMEASKSSSVGQPDYSPTVVRV* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00914 795 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Rops3g00914 795 FunFam Auxin response factor 327 400 - -
Rops3g00914 795 FunFam Auxin response factor 162 266 - -
Rops3g00914 795 SUPERFAMILY DNA-binding pseudobarrel domain 156 274 IPR015300 -
Rops3g00914 795 ProSiteProfiles PB1 domain profile. 667 751 IPR000270 GO:0005515
Rops3g00914 795 CDD B3_DNA 162 264 IPR003340 GO:0003677
Rops3g00914 795 FunFam Auxin response factor 662 756 - -
Rops3g00914 795 SUPERFAMILY CAD & PB1 domains 670 746 - -
Rops3g00914 795 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Rops3g00914 795 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 756 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops3g00914 795 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops3g00914 795 Gene3D - 328 398 - -
Rops3g00914 795 SMART B3_2 164 266 IPR003340 GO:0003677
Rops3g00914 795 Gene3D - 662 756 - -
Rops3g00914 795 Gene3D - 162 266 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00914 Rops-Chr3 11659346 11665858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00914 46 795 B3 DNA Binding Superfamily AT5G60450 60.682 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops3g00914 AUX_IAA 5.9e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00914 - - gmx:100783513 1348.57