Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00910 ATGACCGATTACTGTTGGGGCCATCATGAAATGGATTTGGTACCGAGTATCAAGGAAAAATTGACATATTTTCGAATTAAAGAGCTCAAAGATGTGCTCACTCAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGATCGGATATTATCCATTCTCTCAGATGAACAAGTTTCCAAAATTTGGGCCAAGAAGAATGCTGTTGGGAAAGAACAGGTGGCAAAATTAGTAGATGACACGTATAGGAAAATGCAGATATCCGGGGCCACTGATCTAGCTTCAAAGGGACAGGGTGTGTCAGATAGTAGTAATGTAAAGGTTAAAGGTGAATTGGATGATTCCTTTCAGTCAGATCCAAAGATTCGCTGTCTCTGTGGAAGTACATTGGAAACAGAGGATCTGGTCAAGTGTGATGATGCAAGATGCCATGTGTGGCAACACATCAGTTGTGTTATTATTCCAGAGAAACCTATGGAAGGCATCCCACCAGTTCCTGATAAATTTTATTGTGAAATCTGCCGGCTCAATCGTGCAGACCCGTTTTGGGTTTCGGTGGCACATCCTTTGTTTCCTGTGAAGTTAGCCACAACCAGTATTCCAAATGATGGAACGAACCCGGTACAGAGTGTGGAGAGAACATTTCAACTAACAAGAGCAGACAAGGACTTGGTATCAAGACCAGAAGTTGATGTTGAGGCTTGGTGTATGCTTCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTACACAGACCTACAGGTCAATGGTGTTCCTGTTCGTGCAATTAACAGACCTGGTTCGCAATTGCTTGGGGCTAATGGTCGTGATGATGGTCCAATAATCACGCCATATACACAAGACGGAATTAATAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGCATTGTTAGAAGGCGCAGCATGCAACAGATCCTAAACTTAATTCCAAAGGAGTCTGATGGTGAGCGTTTTGAAGATGCTCTTGCACGCATCTGTCGTTGTGTTGGGGGTGGAAATGCAGCTGACAATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCAGCATTAACCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCTTGTATTCACATGGGTTGTTTTGATCTTGAAGTTTTTGTTGAAATTAATCAACGGACAAGGAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCATTGGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTATGATGATAAATTGTGGTGAAGATGTTACAGAGATTGAGGTGAAGCCTGATGGTTCTTGGCGTGTTAAGGCAAAGAGTGAAAGTGAACGCCTGGATTTAGGGAATCTTGCGCAATGGCACTTTCCTAATGGATCCCTCTGTATTTCTACTGATGATGTCAAAAGAGTGGAAACACTGAAGCAGGTCAAACAGGAAGGTGTTTCAGACAGTCCTCCTGGGTTAAAACTTGGCATCAGAAAGAATCGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGGCACAAACACCTCCTCTGGTAATAGATTAAAAGAGGCTTTTGGAAATCCTGAACAGGTTGTTATCCCGATGAGCAGCAGTGCCACTGGAAGTGGCCGGGATGGTGATGATCCTAGTGTAAACCAGGGTGGTGGTGGGCATATTGATTATTCTACTGCCAATGGGATTGAGATGGATTCTCTGTGTCTTAATAATGTTGATTTAACATATGGGTATACTGCACATAACACTTCTGCTCAGGCGGGTGGTGCAGAAGTTATTGTTCTTAGTGATTCTGAAGAAGACAATGATATATTGGTATCTCCTGCAATGGCATATAAGAGCAACCAGAATGATGCTGCAGATACTTACTCCATGCCACCGCCTGGAATTGTTGATTCTTATGCTGAAGTTCAGAATCTTGGGGGAAATTCATGCTTGGGACTTTTTCCTAATGATGATGATTTTGGGATGTCTTCGCTGTGGTCATTGCCTCCTGGAACTCAGGCTGGTTCTGGATTCCAATTATTTGGTTCTGATGCAGATGTGTCAGATGCATTGGTGCATTTGCATCATGGTCCTATTAATTGCACCTCACCGCTAAATGGTTATGCATTGGATCCAGATACTGCTTTGGGATCTAGTAGTCTCTTACAAGATTCCTCCGCTGGTAGGTCAGATGCTGACTTAAATGGTGGTTTGGTTGACAATCCATTGGCATTTGCTGGAGATGATCCCTCACTTCAGATTTTTCTCCCCACAAGACCAGCTGAGTCATCTGTGCAAAATGAACTGAGAGATCAGGCAAATGTGTCTAATGGTGTCTGCACTGAGGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGGTGGCAATAATGTCGATGCTTCCACTCAAAATGGATTGAATTCTGGACATCAAATCCCAACCAGGGATGATGCCACAAATTCTTTGGCTGATACTGCTTCTTTGCTTCTTGGTATGAATGACGTTAGATCTGACAAAGCAAGTAGGCAAAGATCAGATAGCCCTTTCTCATTTCCTCGCCAAAAACGTTCTGTAAGGCCCCGCTTGTACCTTTCTATTGATTCTTCAGAGTCGGAGTAA 2667 0.4304 MTDYCWGHHEMDLVPSIKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSILSDEQVSKIWAKKNAVGKEQVAKLVDDTYRKMQISGATDLASKGQGVSDSSNVKVKGELDDSFQSDPKIRCLCGSTLETEDLVKCDDARCHVWQHISCVIIPEKPMEGIPPVPDKFYCEICRLNRADPFWVSVAHPLFPVKLATTSIPNDGTNPVQSVERTFQLTRADKDLVSRPEVDVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTQDGINKISLTGCDARIFCLGVRIVRRRSMQQILNLIPKESDGERFEDALARICRCVGGGNAADNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEINQRTRKWQCPICLKNYALENIIIDPYFNRITSMMINCGEDVTEIEVKPDGSWRVKAKSESERLDLGNLAQWHFPNGSLCISTDDVKRVETLKQVKQEGVSDSPPGLKLGIRKNRNGVWEVSKPEGTNTSSGNRLKEAFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSTANGIEMDSLCLNNVDLTYGYTAHNTSAQAGGAEVIVLSDSEEDNDILVSPAMAYKSNQNDAADTYSMPPPGIVDSYAEVQNLGGNSCLGLFPNDDDFGMSSLWSLPPGTQAGSGFQLFGSDADVSDALVHLHHGPINCTSPLNGYALDPDTALGSSSLLQDSSAGRSDADLNGGLVDNPLAFAGDDPSLQIFLPTRPAESSVQNELRDQANVSNGVCTEDWISLSLGGGAGGNNVDASTQNGLNSGHQIPTRDDATNSLADTASLLLGMNDVRSDKASRQRSDSPFSFPRQKRSVRPRLYLSIDSSESE* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00910 888 CDD SP-RING_Siz-like 370 419 IPR031141 -
Rops3g00910 888 MobiDBLite consensus disorder prediction 550 575 - -
Rops3g00910 888 Pfam PHD-finger 124 176 IPR019787 -
Rops3g00910 888 SMART PHD_3 124 176 IPR001965 -
Rops3g00910 888 SUPERFAMILY SAP domain 12 74 IPR036361 -
Rops3g00910 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 181 IPR013083 -
Rops3g00910 888 ProSitePatterns Zinc finger PHD-type signature. 125 175 IPR019786 -
Rops3g00910 888 SMART sap_9 21 55 IPR003034 -
Rops3g00910 888 FunFam E3 SUMO-protein ligase SIZ1 10 76 - -
Rops3g00910 888 ProSiteProfiles Zinc finger SP-RING-type profile. 356 439 IPR004181 GO:0008270
Rops3g00910 888 MobiDBLite consensus disorder prediction 812 834 - -
Rops3g00910 888 Pfam MIZ/SP-RING zinc finger 369 417 IPR004181 GO:0008270
Rops3g00910 888 ProSiteProfiles SAP motif profile. 21 55 IPR003034 -
Rops3g00910 888 MobiDBLite consensus disorder prediction 850 888 - -
Rops3g00910 888 SUPERFAMILY FYVE/PHD zinc finger 117 179 IPR011011 -
Rops3g00910 888 Pfam SAP domain 24 52 IPR003034 -
Rops3g00910 888 FunFam E3 SUMO-protein ligase SIZ2 343 457 - -
Rops3g00910 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 457 IPR013083 -
Rops3g00910 888 Gene3D SAP domain 13 72 IPR036361 -
Rops3g00910 888 CDD PHD_Bye1p_SIZ1_like 124 175 - -
Rops3g00910 888 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 19 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00910 Rops-Chr3 11628900 11639835 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops3g00910 PHD 6.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00910 - - gmx:100793735 1554.27