Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops3g00910 | ATGACCGATTACTGTTGGGGCCATCATGAAATGGATTTGGTACCGAGTATCAAGGAAAAATTGACATATTTTCGAATTAAAGAGCTCAAAGATGTGCTCACTCAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGATCGGATATTATCCATTCTCTCAGATGAACAAGTTTCCAAAATTTGGGCCAAGAAGAATGCTGTTGGGAAAGAACAGGTGGCAAAATTAGTAGATGACACGTATAGGAAAATGCAGATATCCGGGGCCACTGATCTAGCTTCAAAGGGACAGGGTGTGTCAGATAGTAGTAATGTAAAGGTTAAAGGTGAATTGGATGATTCCTTTCAGTCAGATCCAAAGATTCGCTGTCTCTGTGGAAGTACATTGGAAACAGAGGATCTGGTCAAGTGTGATGATGCAAGATGCCATGTGTGGCAACACATCAGTTGTGTTATTATTCCAGAGAAACCTATGGAAGGCATCCCACCAGTTCCTGATAAATTTTATTGTGAAATCTGCCGGCTCAATCGTGCAGACCCGTTTTGGGTTTCGGTGGCACATCCTTTGTTTCCTGTGAAGTTAGCCACAACCAGTATTCCAAATGATGGAACGAACCCGGTACAGAGTGTGGAGAGAACATTTCAACTAACAAGAGCAGACAAGGACTTGGTATCAAGACCAGAAGTTGATGTTGAGGCTTGGTGTATGCTTCTGAACGACAAGGTTCCATTCAGGATGCAATGGCCACAGTACACAGACCTACAGGTCAATGGTGTTCCTGTTCGTGCAATTAACAGACCTGGTTCGCAATTGCTTGGGGCTAATGGTCGTGATGATGGTCCAATAATCACGCCATATACACAAGACGGAATTAATAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGCATTGTTAGAAGGCGCAGCATGCAACAGATCCTAAACTTAATTCCAAAGGAGTCTGATGGTGAGCGTTTTGAAGATGCTCTTGCACGCATCTGTCGTTGTGTTGGGGGTGGAAATGCAGCTGACAATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCAGCATTAACCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCTTGTATTCACATGGGTTGTTTTGATCTTGAAGTTTTTGTTGAAATTAATCAACGGACAAGGAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCATTGGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTATGATGATAAATTGTGGTGAAGATGTTACAGAGATTGAGGTGAAGCCTGATGGTTCTTGGCGTGTTAAGGCAAAGAGTGAAAGTGAACGCCTGGATTTAGGGAATCTTGCGCAATGGCACTTTCCTAATGGATCCCTCTGTATTTCTACTGATGATGTCAAAAGAGTGGAAACACTGAAGCAGGTCAAACAGGAAGGTGTTTCAGACAGTCCTCCTGGGTTAAAACTTGGCATCAGAAAGAATCGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGGCACAAACACCTCCTCTGGTAATAGATTAAAAGAGGCTTTTGGAAATCCTGAACAGGTTGTTATCCCGATGAGCAGCAGTGCCACTGGAAGTGGCCGGGATGGTGATGATCCTAGTGTAAACCAGGGTGGTGGTGGGCATATTGATTATTCTACTGCCAATGGGATTGAGATGGATTCTCTGTGTCTTAATAATGTTGATTTAACATATGGGTATACTGCACATAACACTTCTGCTCAGGCGGGTGGTGCAGAAGTTATTGTTCTTAGTGATTCTGAAGAAGACAATGATATATTGGTATCTCCTGCAATGGCATATAAGAGCAACCAGAATGATGCTGCAGATACTTACTCCATGCCACCGCCTGGAATTGTTGATTCTTATGCTGAAGTTCAGAATCTTGGGGGAAATTCATGCTTGGGACTTTTTCCTAATGATGATGATTTTGGGATGTCTTCGCTGTGGTCATTGCCTCCTGGAACTCAGGCTGGTTCTGGATTCCAATTATTTGGTTCTGATGCAGATGTGTCAGATGCATTGGTGCATTTGCATCATGGTCCTATTAATTGCACCTCACCGCTAAATGGTTATGCATTGGATCCAGATACTGCTTTGGGATCTAGTAGTCTCTTACAAGATTCCTCCGCTGGTAGGTCAGATGCTGACTTAAATGGTGGTTTGGTTGACAATCCATTGGCATTTGCTGGAGATGATCCCTCACTTCAGATTTTTCTCCCCACAAGACCAGCTGAGTCATCTGTGCAAAATGAACTGAGAGATCAGGCAAATGTGTCTAATGGTGTCTGCACTGAGGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGGTGGCAATAATGTCGATGCTTCCACTCAAAATGGATTGAATTCTGGACATCAAATCCCAACCAGGGATGATGCCACAAATTCTTTGGCTGATACTGCTTCTTTGCTTCTTGGTATGAATGACGTTAGATCTGACAAAGCAAGTAGGCAAAGATCAGATAGCCCTTTCTCATTTCCTCGCCAAAAACGTTCTGTAAGGCCCCGCTTGTACCTTTCTATTGATTCTTCAGAGTCGGAGTAA | 2667 | 0.4304 | MTDYCWGHHEMDLVPSIKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSILSDEQVSKIWAKKNAVGKEQVAKLVDDTYRKMQISGATDLASKGQGVSDSSNVKVKGELDDSFQSDPKIRCLCGSTLETEDLVKCDDARCHVWQHISCVIIPEKPMEGIPPVPDKFYCEICRLNRADPFWVSVAHPLFPVKLATTSIPNDGTNPVQSVERTFQLTRADKDLVSRPEVDVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTQDGINKISLTGCDARIFCLGVRIVRRRSMQQILNLIPKESDGERFEDALARICRCVGGGNAADNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEINQRTRKWQCPICLKNYALENIIIDPYFNRITSMMINCGEDVTEIEVKPDGSWRVKAKSESERLDLGNLAQWHFPNGSLCISTDDVKRVETLKQVKQEGVSDSPPGLKLGIRKNRNGVWEVSKPEGTNTSSGNRLKEAFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSTANGIEMDSLCLNNVDLTYGYTAHNTSAQAGGAEVIVLSDSEEDNDILVSPAMAYKSNQNDAADTYSMPPPGIVDSYAEVQNLGGNSCLGLFPNDDDFGMSSLWSLPPGTQAGSGFQLFGSDADVSDALVHLHHGPINCTSPLNGYALDPDTALGSSSLLQDSSAGRSDADLNGGLVDNPLAFAGDDPSLQIFLPTRPAESSVQNELRDQANVSNGVCTEDWISLSLGGGAGGNNVDASTQNGLNSGHQIPTRDDATNSLADTASLLLGMNDVRSDKASRQRSDSPFSFPRQKRSVRPRLYLSIDSSESE* | 889 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops3g00910 | 888 | CDD | SP-RING_Siz-like | 370 | 419 | IPR031141 | - | |
Rops3g00910 | 888 | MobiDBLite | consensus disorder prediction | 550 | 575 | - | - | |
Rops3g00910 | 888 | Pfam | PHD-finger | 124 | 176 | IPR019787 | - | |
Rops3g00910 | 888 | SMART | PHD_3 | 124 | 176 | IPR001965 | - | |
Rops3g00910 | 888 | SUPERFAMILY | SAP domain | 12 | 74 | IPR036361 | - | |
Rops3g00910 | 888 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 181 | IPR013083 | - | |
Rops3g00910 | 888 | ProSitePatterns | Zinc finger PHD-type signature. | 125 | 175 | IPR019786 | - | |
Rops3g00910 | 888 | SMART | sap_9 | 21 | 55 | IPR003034 | - | |
Rops3g00910 | 888 | FunFam | E3 SUMO-protein ligase SIZ1 | 10 | 76 | - | - | |
Rops3g00910 | 888 | ProSiteProfiles | Zinc finger SP-RING-type profile. | 356 | 439 | IPR004181 | GO:0008270 | |
Rops3g00910 | 888 | MobiDBLite | consensus disorder prediction | 812 | 834 | - | - | |
Rops3g00910 | 888 | Pfam | MIZ/SP-RING zinc finger | 369 | 417 | IPR004181 | GO:0008270 | |
Rops3g00910 | 888 | ProSiteProfiles | SAP motif profile. | 21 | 55 | IPR003034 | - | |
Rops3g00910 | 888 | MobiDBLite | consensus disorder prediction | 850 | 888 | - | - | |
Rops3g00910 | 888 | SUPERFAMILY | FYVE/PHD zinc finger | 117 | 179 | IPR011011 | - | |
Rops3g00910 | 888 | Pfam | SAP domain | 24 | 52 | IPR003034 | - | |
Rops3g00910 | 888 | FunFam | E3 SUMO-protein ligase SIZ2 | 343 | 457 | - | - | |
Rops3g00910 | 888 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 347 | 457 | IPR013083 | - | |
Rops3g00910 | 888 | Gene3D | SAP domain | 13 | 72 | IPR036361 | - | |
Rops3g00910 | 888 | CDD | PHD_Bye1p_SIZ1_like | 124 | 175 | - | - | |
Rops3g00910 | 888 | PANTHER | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN | 19 | 670 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops3g00910 | Rops-Chr3 | 11628900 | 11639835 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Rops3g00910 | PHD | 6.2e-07 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops3g00910 | - | - | gmx:100793735 | 1554.27 |