Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00900 ATGGACTCTCACTCAACGGAAGACTTACAGTGTTTATTATCGGAGCAACGCCGTGAGCTGGCGGCGGCGGAAGCCATGGAATCCGACCTCGAATTCGCATTTCGCCTTCAATTAGAAGAAGCCCTCGCCGCTTCCCTCGTCACCCACCCCTCTTCTTCCTCTTCCTCCATCATGCAAGAAGAGCCTTCCCCTGACGACGCCGTTTTGAAAGCCACGTCACTCCAATTGGAAGAACTAACGAAGATGGAGCGCGAGATGAAGGACAAGGAACAGAGCGAAACGGAGATGAAGAAAATGAGGGAAGATCTCAGCCGTCAGATTCACGATCAGAAGATGGCGTCGGAGATTGTGGATATTTCCGATGATGAATGGAACGATTGGGGTGATAATTTCGAGAAACCGTTTGGTGAGGGTAGTTCGAAGGGGGGAATTGATGAAGATGCGGTTTTTAGGGTTTATGTTAAGGGTTTGGTGAGTGAGGAGAATGTGAGGGGTGAGAAGGTAATTTTGGGTGGGATTGGTGTTGCGATTTGTGACCTTTCTGATAAGTTGATGTTTGAGGTGTCTAAGCCACTCGCTGGGAATGGAACAAGTAAAGTTGCTGCGGAGGCTAAGGCTTTGATTGAAGCTTTCAATGCTGCAATTGCTTTGGATTTAAAGCGTGTTATCTTTTTTTGTGATTACTTTCCCCTCTTCCAATTTGTAAGTGGAAGATGGCCTGTGAAACAGCGGAAGATTGTTATGCTAGTTAATCAGGTGAATCTGCTTAAAAAAAAATTTACATACTGCAGTCCAAGATTTGTGGCCAGACATGATATCAAGTTTGCATTTAAGCTTGCAAGAGATGCAATTGTTTCCCAGTCCACAAGGCCCGCAGAATCTGGCGGTAGCAGGAGTCTGAATGAAACATGTGTCATTTGTTTGGAGGATACTGATGTCAATCAAATCTTTTCAATTGATGGTTGTCAACACCGGTATTGCTTTTCTTGCATGAAACAACACGTGGAGGTGAAGTTGCTCCATGGAATGGTGCCAAAATGTCCTCATGAGGGATGCAATTATGAGCTTCTAGTCGACAGTTGCCGGAAATTCTTGACTAATAAATTAATTGAGACCATGCAGCAGCGAAAATTGGAAGCTTCTATTCCAGTTACTGAGAAAATTTATTGTCCTTATCCAAGATGCTCTGCATTAATGTCAAAAACTGAGGTTTTAGAATATGCCAAGAATTTTTTTGGTGACTCTGAACAATCAGGACCCAAGAAATGCATACAATGTCATGGTCTTTTCTGTTTCAGCTGCAAAGTCCCTTGGCATAGTGGTATGACATGTTATAATTACAAAAGGTTGAATCCTAACCCTCCAGCAGACGATGTGAAGCTGAAGTTTCTGGCGACAAGGAGTCTTTGGCGGCAGTGTGTGAAGTGTAACCATATGATCGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGTGGCTATGAATTTTGCTATAACTGTGGAGCTGAGTGGAAAGACAAAAAAGCAACATGTGCTTGTCCACTTTGGGCGGAGGATAATATTTGGTTAGAGGGTCATGATAGGAGGGACTGGGAAGAAGAGGAAGAAGAAGATGATGACTACTACAGCTCTGATTATTCCGATGAATTTTATTAA 1659 0.4358 MDSHSTEDLQCLLSEQRRELAAAEAMESDLEFAFRLQLEEALAASLVTHPSSSSSSIMQEEPSPDDAVLKATSLQLEELTKMEREMKDKEQSETEMKKMREDLSRQIHDQKMASEIVDISDDEWNDWGDNFEKPFGEGSSKGGIDEDAVFRVYVKGLVSEENVRGEKVILGGIGVAICDLSDKLMFEVSKPLAGNGTSKVAAEAKALIEAFNAAIALDLKRVIFFCDYFPLFQFVSGRWPVKQRKIVMLVNQVNLLKKKFTYCSPRFVARHDIKFAFKLARDAIVSQSTRPAESGGSRSLNETCVICLEDTDVNQIFSIDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHEGCNYELLVDSCRKFLTNKLIETMQQRKLEASIPVTEKIYCPYPRCSALMSKTEVLEYAKNFFGDSEQSGPKKCIQCHGLFCFSCKVPWHSGMTCYNYKRLNPNPPADDVKLKFLATRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKDKKATCACPLWAEDNIWLEGHDRRDWEEEEEEDDDYYSSDYSDEFY* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00900 552 FunFam RBR-type E3 ubiquitin transferase 150 287 - -
Rops3g00900 552 Pfam Reverse transcriptase-like 170 283 IPR002156 GO:0003676|GO:0004523
Rops3g00900 552 Coils Coil 69 109 - -
Rops3g00900 552 Gene3D - 442 550 - -
Rops3g00900 552 SMART ibrneu5 371 444 IPR002867 GO:0008270
Rops3g00900 552 SMART ibrneu5 457 512 IPR002867 GO:0008270
Rops3g00900 552 Gene3D - 150 290 IPR036397 GO:0003676
Rops3g00900 552 ProSiteProfiles Zinc finger RING-type profile. 304 348 IPR001841 -
Rops3g00900 552 Pfam IBR domain, a half RING-finger domain 373 444 IPR002867 GO:0008270
Rops3g00900 552 Pfam IBR domain, a half RING-finger domain 464 512 IPR002867 GO:0008270
Rops3g00900 552 ProSiteProfiles TRIAD supradomain profile. 300 524 IPR044066 -
Rops3g00900 552 MobiDBLite consensus disorder prediction 531 552 - -
Rops3g00900 552 CDD BRcat_RBR_unk 384 447 - -
Rops3g00900 552 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 106 520 IPR031127 GO:0004842|GO:0016567
Rops3g00900 552 ProSitePatterns Zinc finger RING-type signature. 322 331 IPR017907 -
Rops3g00900 552 SUPERFAMILY RING/U-box 458 521 - -
Rops3g00900 552 FunFam RBR-type E3 ubiquitin transferase 299 384 - -
Rops3g00900 552 MobiDBLite consensus disorder prediction 529 552 - -
Rops3g00900 552 FunFam RBR-type E3 ubiquitin transferase 442 551 - -
Rops3g00900 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 384 IPR013083 -
Rops3g00900 552 SUPERFAMILY RING/U-box 302 384 - -
Rops3g00900 552 CDD Rcat_RBR_unk 470 505 - -
Rops3g00900 552 Coils Coil 6 26 - -
Rops3g00900 552 SUPERFAMILY Ribonuclease H-like 171 284 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00900 Rops-Chr3 11516377 11519448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00900 149 503 C3H Transcription Factor Family AT2G19610 34.722 1.20e-67 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00900 - - aprc:113858620 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00900 3 11516377 11519448 Rops3g00900 3 11516377 11519448 ECH