Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00899 ATGGAGAGCAGTGACACATACACCCCTACTTCCTCTGCCCCACTTTCTCAATCTCCTACTTCTTCATCTTCCTCACCACCACCACCACCTTCAGTTCCTCAAGTTGTCATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGCGAAGATGTGCTGATAAATGTGTTTTGGCACCTTATTTTCCTCCCACTGAACCTGCCAAGTTTACTATTGCCCACAGAGTCTTTGGTGCCAGCAACATCATCAAGTTCCTACAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTGACCAGCATGGTTTATGAGGCTAGTGCAAGAATAAGAGACCCGGTTTATGGTTGTGCAGGAGCAATTTGCCAGCTCCAAAAGCAGGTCAATGAGCTTCAAGCACAGTTAGCCAAGGCACAAGTTGAGCTTGTAAACATGCAATTCCAACAAGCCAATCTCGTGGCTCTAGTTTGCATGGAAATGGCACAAACCCCACAAGAATCACCTCAACAATCAGTGGATAATTTCATTTCAAGTCCTCCCCTAAGTAATAATGGCTATCAAAGTGGTATGAACTTCCTTGAGGAGAACACTAGCCTAAACTCACTATGGGAGCCACTTTGGACTTGA 618 0.4579 MESSDTYTPTSSAPLSQSPTSSSSSPPPPPSVPQVVMSPCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQVELVNMQFQQANLVALVCMEMAQTPQESPQQSVDNFISSPPLSNNGYQSGMNFLEENTSLNSLWEPLWT* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00899 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 38 163 - -
Rops3g00899 205 MobiDBLite consensus disorder prediction 1 31 - -
Rops3g00899 205 Pfam Lateral organ boundaries (LOB) domain 39 136 IPR004883 -
Rops3g00899 205 MobiDBLite consensus disorder prediction 1 20 - -
Rops3g00899 205 ProSiteProfiles LOB domain profile. 38 139 IPR004883 -
Rops3g00899 205 Coils Coil 118 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00899 Rops-Chr3 11499769 11501847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00899 34 205 AS2 family AT1G07900 66.286 3.29e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops3g00899 LOB 2.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00899 - - gmx:100789504 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00899 3 11499769 11501847 Rops3g00899 3 11499769 11501847 ECH