Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00895 ATGGATCCTTCAAGTGGACAACACCAGCAAATGTCTAACCAGTCATTGGAGAACATGTTAGCGTGCTCAAAAGCACAACAAGAGAGGAAGCCAAGACCTCAACCAGAACAAGCTCTAAAATGCCCCAGATGTGACTCCAACAACACCAAATTTTGTTACTACAACAATTACAGTCTTTCACAGCCAAGATACTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCTGTTGGTGGAGGGTGCAGGAAGAACAAGAGAGCATCATCATCTTCATCATCAAAGAGGGTTCAAGATCAAACATTCAACCCCAATCCTAACCCACTCACTGGCCTAAATCCATTGTCTTATGACTCCAGTGACCTTACCCTTGCATTCGCTAGGCTCCAAAAACAGTCATGTGGGCAAATGGGTTTTGATGAACATGATCTTTCAATTTTGGGGAACCCCACAAGCACCCCATGTGATATTCTGGGCAATCATGGCATGAACCCTTCATCTACAAACCCTGGATTCTTAGATGCGCTTAGAAGTGGGTTCCTTGGAACCCAGAATAATATGCAGAATCTGTACTATGGTGGATATGGGAATGGAGACATGGGAGAAGTGGACAATGGCAATGCTTGTGGTGTTGGGGTTAGTGAAGAGATGATGCTGCCTTATGATCAAGAAATGAGTATTGCAACAACTCAAGCAGTGACAGTCACTACCATGAAACAAGAACTGTGTAATGGAAGGGAACAAAATGAGAGTAAGGTGTTGTGGGGCTTCCCATGGCAACTCAATGGAGACACAAACATGGGTGAACTTGACTCAGGAAGAGCTAGTTGGAATGGTCTTACATCATCTTGGCATGGACTTCTCAATAGTCCCCTAATGTAG 900 0.4433 MDPSSGQHQQMSNQSLENMLACSKAQQERKPRPQPEQALKCPRCDSNNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRASSSSSSKRVQDQTFNPNPNPLTGLNPLSYDSSDLTLAFARLQKQSCGQMGFDEHDLSILGNPTSTPCDILGNHGMNPSSTNPGFLDALRSGFLGTQNNMQNLYYGGYGNGDMGEVDNGNACGVGVSEEMMLPYDQEMSIATTQAVTVTTMKQELCNGREQNESKVLWGFPWQLNGDTNMGELDSGRASWNGLTSSWHGLLNSPLM* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00895 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 189 IPR045174 GO:0003700|GO:0006355
Rops3g00895 299 MobiDBLite consensus disorder prediction 1 22 - -
Rops3g00895 299 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Rops3g00895 299 MobiDBLite consensus disorder prediction 91 120 - -
Rops3g00895 299 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Rops3g00895 299 MobiDBLite consensus disorder prediction 84 120 - -
Rops3g00895 299 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Rops3g00895 299 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00895 Rops-Chr3 11450030 11451975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00895 1 299 C2C2-Dof Transcription Factor Family AT2G28510 40.719 1.42e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops3g00895 zf-Dof 1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00895 - - gmx:100799737 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00711 7 9416969 9418853 Rops3g00895 3 11450030 11451975 PCT