Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00891 ATGGATCAGTTCATTGAAAACTTGCCGCCAATGGATCTGATGCGCTCCGAGAAGATGACCTTCGTTCAACTCATCATTCCCGTCGAGTCCGCTCACCGTGCCATCTCCTATTTAGGCGAACTCGGTCTCCTTCAATTCCGAGACTTAAATGCTGAAAAAAGCCCCTTTCAGAGAACATTTGCTAACCAGGTAAAGCGATGTGCGGAAATGTCAAGAAAGCTACGATTCTTCAAGGATCAAATCAATAAAGCCGGTCTAATGTCCTCTCATGCTGTCGTGCAATCAGATATTTACTTGGAAGATTTAGAGATACAACTTGCTGAGCATGAAAATGAGGTAATTGAAATGAACTCTAACAGTGAGAAACTTCAGCAATCATATAATGAACTCCTGGAGTTCAAGATTGTATTACAAAAGGCAGGTGGTTTTCTTGTTTCAAGTCATGGCCATGCCGTTTCGGAAGAGAGAGAGCTGGAGAATGTTTACTCAAATGGAGACTATGTTGAGACGCCATTTTTGTTTGAACAGGAAGTGAAGCCTGGACCATCAAATCAATCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAAGTTCTGAGGTTTGAAAGGATGTTGTTTCGTGCTACAAGAGGCAATATGCTTTTCAATCAGGCACCAGCTGGTGAACAAATCATGGATCCTACTTCAACTGAGATGGTTGAGAAAACTGTGTTTGTTGTGTTTTTCTCCGGGGAGCAAGCAAGAACAAAGATTCTGAAAATTTGTGAGGCATTTGGTGCAAATTGTTATCCTGTTCCTGAAGATATGAATAAACAGAGGCAAATAACCGGGGAGGTTTCATCACGTCTTGCTGACTTAGAGGCAACTTTGGATGCTGGGATTAGGCATCGGAATAAGGCTCTATCTTTTGTAGGAGGTCATTTAGCAAAATGGATGGACATGGTAAGAAAAGAGAAGGCTGTATATGATACACTGAACATGTTAAATTTTGATGTCACCAAAAAATGTCTTGTTGGAGAGGGCTGGTGTCCAGTATTTGCAAAAATAAAGATTCAGGAGGCACTGCAACGTGCAACTTTTGACAGCAGTTCTCAAGTGGGCACTATCTTTCATTCAATGGATTCATTGGAATCGCCACCTACATATTTCAGGACCAACAGTTTTACTAGTCCATATCAGGAAATTGTCGATGCATATGGCGTTGCAAGATATCAAGAAGCAAATCCTGCAGTTTACACAACTATTATATTCCCATTTCTTTTTGCGGTGATGTTCGGGGACTGGGGTCATGGAATTTGCCTGTTGCTTGGAGCATTGGTTCTTATAGCACGTGAAAGCAAGCTCAGCACTCAGCGACTTGGAAGCTTTATGGAGATGCTATTTGGTGGTCGCTATGTGCTTCTTTTGATGTCACTATTTTCAATTTATTGTGGGTTAATCTACAATGAATTCTTCTCTGTTCCTTTTCACATATTTGGTGCGTCTGCATACACATGCCGAGATAGTTCATGCAGGGATGCACATACTACTGGCTTAATAAAATCTCGAGACCCATACCCATTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGTTCTGAATTGTCTTTTCTGAACTCTCTCAAGATGAAGATGTCCATTCTGTTTGGTGTGGTGCATATGAACTTGGGAATTATATTAAGTTATTTCAATGCTTGTTTCTTTGGCAACTCACTGGATATAAGGTACCAGTTTGTGCCGCAGGTGATTTTCCTTAACAGCCTTTTTGGATATCTTTCCCTTCTTATTGTTGTCAAGTGGTGTACCGGCTCTCAGGCAGACCTTTATCATGTAATGATTTACATGTTTTTAAGCCCCTTTGACAATCTTGGTGAGAATCAGTTGTTCGGAGGACAAAGACCACTTCAAGTTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCCTTCCAAAACCTTTTATACTAAAGAAACTTCATAATGAGAGATTTCAAGGACGCGCTTATGGCGTGCTTAACGCCTCTGAGGTGGATCTTGAGGTGGAACCGGATTCTGCCAGGCAACATCATGAAGAATTCAATTTCAGTGAGGTTTTTGTTCATCAAATGATTCATGCCATTGAGTTTGTTCTGGGTTCAGTTTCAAATACGGCGTCATATCTTCGACTTTGGGCATTAAGCTTGGCTCACTCAGAACTTTCTACTGTTTTTTATGAGAAAGTCCTGCTACTTGCTTGGGGGTATGACAATATTGTCATTCGGTTAGTGGGGCTAGCTGTTTTTGCCTTTGCAACTGCCTTTATACTACTTATGATGGAGACTCTGAGCGCTTTTCTTCACGCCCTGCGTCTTCACTGGGTAGAATTTCAAAATAAATTCTACCATGGTGATGGCTACAAGTTCAGACCCTTTTCTTTTGCCTCCTTAACAGAGGATGAAAATTGA 2454 0.4128 MDQFIENLPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGLLQFRDLNAEKSPFQRTFANQVKRCAEMSRKLRFFKDQINKAGLMSSHAVVQSDIYLEDLEIQLAEHENEVIEMNSNSEKLQQSYNELLEFKIVLQKAGGFLVSSHGHAVSEERELENVYSNGDYVETPFLFEQEVKPGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPAGEQIMDPTSTEMVEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDMNKQRQITGEVSSRLADLEATLDAGIRHRNKALSFVGGHLAKWMDMVRKEKAVYDTLNMLNFDVTKKCLVGEGWCPVFAKIKIQEALQRATFDSSSQVGTIFHSMDSLESPPTYFRTNSFTSPYQEIVDAYGVARYQEANPAVYTTIIFPFLFAVMFGDWGHGICLLLGALVLIARESKLSTQRLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPFHIFGASAYTCRDSSCRDAHTTGLIKSRDPYPFGVDPSWRGSRSELSFLNSLKMKMSILFGVVHMNLGIILSYFNACFFGNSLDIRYQFVPQVIFLNSLFGYLSLLIVVKWCTGSQADLYHVMIYMFLSPFDNLGENQLFGGQRPLQVVLLLLAVIAVPWMLLPKPFILKKLHNERFQGRAYGVLNASEVDLEVEPDSARQHHEEFNFSEVFVHQMIHAIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNIVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFASLTEDEN* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00891 817 PIRSF ATP6V0A1 9 817 IPR026028 GO:0000220|GO:0046961
Rops3g00891 817 Coils Coil 92 126 - -
Rops3g00891 817 PANTHER VACUOLAR PROTON ATPASES 13 815 IPR002490 GO:0033179|GO:0046961|GO:1902600
Rops3g00891 817 Pfam V-type ATPase 116kDa subunit family 37 809 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00891 Rops-Chr3 11394500 11405770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00891 1 810 Primary Pumps ATPases(2) AT2G28520 79.877 0.0 1331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00891 K02154 - gmx:100786845 1495.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00712 7 9445793 9456750 Rops3g00891 3 11394500 11405770 PCT