Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00882 ATGTTAGATCTTAATCTGAATGCGAACTCGGCCGATTCGACTCAGAACGTGGACTCGCCGATTCTGTTGGAGAAGTTTCCAGAAGGTTCCTGGAACAAAATGGCAGAGTCAGGGACCTCGAATTCCTCTGTCGTCAATGCGGAATGGTCCAGCAACGGTGGAGGCGATGAGGACTCGTGCTCTACACGCGCCGATGACGTGATCACCTTCAATTTCGATATCCTTAAGGTGGAAGGTTCGAACGACGTCGTAACGAAGGAGCTGTTCCCTGTGAGTGGAGGAGTTAAAGGAGTGGAGCAAGGTGGGCCCGGGAATTGGCAGTGGCAGGCTAATACGTCGTCGTTTCAGCCAAAGAATGGCTCAGTGGGTCTCTCGTTCGATCTCTTGGGTAGGAATGGTGAGATGAAGATGGTTCAGCCTCATCAGCAACCAGCGAAGAAGAGTAGGAGGGGACCAAGGTCTCGAAGCTCGCAATACAGAGGGGTCACCTTTTACAGAAGGACTGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACTGCTCATGCTGCTGCTAGAGCCTACGATCGTGCTGCTGTCAAGTTCAGGGGAGTTGATGCTGACATCAATTTCAGTCTGAGTGATTACGAGGATGATCTTAAACAGACGAAGAATTTATCCAAGGAGGAATTCGTGCACATACTCCGTCGCCAAAGTACTGGTTTCTCAAGGGGGAGTTCAAAATACCGAGGAGTAACACTCCACAAGTGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGAAAAAAGTATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGGCCTATGACAAGGCAGCTATCAAATGCAATGGAAGGGAAGCAGTGACTAACTTTGAGCCAAGTGCATACGAAGGAGAGATGAAACCTGCAGCCATTAATGAAGGTGGCAGTCAAAATCTTGATCTCAATTTGGGCATAGCGGCCCCAGGACCTGGTCCCAAAGAAAACTGGGGGCAACTTCACTTCTCCTCTGTCCCTTACAACATGCATGCTGGAAGAAGTTCAAGGATGGAAACCAATGTTAATTCAGGAATTGGTAATCCACCTTTCCAAAGGCTGGTTGTAACTGAAGAGCGTCCTTCTGTGTGGAATGGCATGTGTCCTCGTTTCTTTCCCAATGAGGAAAGAGCAGAGAGTATCAGCATAGCTTCAAAAGGACTCCCAAGTTGGGCGTGGCAAACGCATGGCCAGGTCACTGCTACCCCAATGCCACCGTTCTCTGCTGCAGCATCATCAGGATTCTCAATTTCAGCTTCCTTTCCATCCACTGCCTCTGTTTTGCTTCATCCAGCGACCTAG 1383 0.491 MLDLNLNANSADSTQNVDSPILLEKFPEGSWNKMAESGTSNSSVVNAEWSSNGGGDEDSCSTRADDVITFNFDILKVEGSNDVVTKELFPVSGGVKGVEQGGPGNWQWQANTSSFQPKNGSVGLSFDLLGRNGEMKMVQPHQQPAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVKFRGVDADINFSLSDYEDDLKQTKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSAYEGEMKPAAINEGGSQNLDLNLGIAAPGPGPKENWGQLHFSSVPYNMHAGRSSRMETNVNSGIGNPPFQRLVVTEERPSVWNGMCPRFFPNEERAESISIASKGLPSWAWQTHGQVTATPMPPFSAAASSGFSISASFPSTASVLLHPAT* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00882 460 Gene3D AP2/ERF domain 249 308 IPR036955 GO:0003700|GO:0006355
Rops3g00882 460 Gene3D AP2/ERF domain 157 216 IPR036955 GO:0003700|GO:0006355
Rops3g00882 460 SUPERFAMILY DNA-binding domain 249 308 IPR016177 GO:0003677
Rops3g00882 460 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Rops3g00882 460 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Rops3g00882 460 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Rops3g00882 460 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Rops3g00882 460 MobiDBLite consensus disorder prediction 137 159 - -
Rops3g00882 460 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Rops3g00882 460 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 113 340 - -
Rops3g00882 460 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Rops3g00882 460 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
Rops3g00882 460 MobiDBLite consensus disorder prediction 33 58 - -
Rops3g00882 460 FunFam AP2-like ethylene-responsive transcription factor 249 309 - -
Rops3g00882 460 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
Rops3g00882 460 Pfam AP2 domain 249 299 IPR001471 GO:0003700|GO:0006355
Rops3g00882 460 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Rops3g00882 460 CDD AP2 249 309 IPR001471 GO:0003700|GO:0006355
Rops3g00882 460 MobiDBLite consensus disorder prediction 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00882 Rops-Chr3 11321886 11325961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00882 1 459 AP2-EREBP Transcription Factor Family AT5G60120 45.102 5.65e-104 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Rops3g00882 AP2 2.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00882 K09284 - gmx:100788303 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00717 7 9550026 9553917 Rops3g00882 3 11321886 11325961 PCT