Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00879 ATGGAAAACAATGCTGAATCTGAGAATACCAAAGGGAAAGGAGGGATTCCCATTCACGGAGGAAAGTACGTTCGTTACAACATCTTAGGCAACCTTTTCCAGGTTTATTCTAAATACGCTCCCCCATTTCAACCCGTTGGTCGCGGCGCATACGGCATCGTTTGCTGTGCTACGAATTCGGAGACGAAAGAAGGGGTTGCGATAAAGAAAATTGGGAATGCGTTTGATAACAGGATTGATGCTAAGAGGACACTAAGGGAAATCAAACTTCTTTGTCACATGGAACATGATAACATAATTAAGATTAAGGACATAATAAAGCCACCAGATAGGGAGAATTTCAATGATGTGTATATTGTGTATGAATTGATGGATACTGATCTGCATCAGATTATTCAATCTAATCAGGCTCTCACTGATGAACACTGCCAGTATTTTCTATATCAACTCTTGAGAGGATTGAAGTACATACACTCAGCAAATGTTTTGCACCGAGATCTAAAACCAAGCAATTTACTTCTCAATGCAAACTGTGATCTCAAAATATGTGACTTTGGGCTTGCCAGAACAACCTCTGAGACAGACTTTATGACAGAATATGTTGTGACTCGCTGGTACAGAGCCCCTGAATTGCTACTGAATTGTTCAGAATATACTGCAGCTATTGATGTATGGTCGGTTGGTTGCATTTTGATGGAGATAATTAGAAGGGAGCCTTTATTTCCTGGTAAAGATTATGTTCAGCAATTAGCACTCATAACTGAGTTACTAGGTTCACCAGATGACTCAGACCTTGGATTCCTCAGAAGTGATAATGCAAAGAAATATGTTAAGCAGCTCCCACATGTAGAAAAGCAGCCCTTTGCAAAGCGGTTTCCTGATGTGTCCCCATTGGCAATTGATCTTGCTGAGAAAATGTTGGTTTTTGATCCCTCCAAACGCATAACTGTGGAGGAAGCACTGAATCACCCATATATGTCAAGTCTTCATGAGATCAACGAGGAGCCCACTTGTCCAACTCCTTTCATCTTTGATTTCGAACAGACAACTCTGAATGAAGAAGATATAAAGGAGCTCATATGGAGGGAGTCTCTGAACTTCAGCCAGGATCAGATGCTGGCATAA 1125 0.4098 MENNAESENTKGKGGIPIHGGKYVRYNILGNLFQVYSKYAPPFQPVGRGAYGIVCCATNSETKEGVAIKKIGNAFDNRIDAKRTLREIKLLCHMEHDNIIKIKDIIKPPDRENFNDVYIVYELMDTDLHQIIQSNQALTDEHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDVWSVGCILMEIIRREPLFPGKDYVQQLALITELLGSPDDSDLGFLRSDNAKKYVKQLPHVEKQPFAKRFPDVSPLAIDLAEKMLVFDPSKRITVEEALNHPYMSSLHEINEEPTCPTPFIFDFEQTTLNEEDIKELIWRESLNFSQDQMLA* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00879 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Rops3g00879 374 SMART serkin_6 40 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00879 374 ProSitePatterns MAP kinase signature. 75 178 IPR003527 GO:0004707|GO:0005524|GO:0006468
Rops3g00879 374 ProSiteProfiles Protein kinase domain profile. 40 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00879 374 CDD STKc_TEY_MAPK 33 368 - -
Rops3g00879 374 FunFam Mitogen-activated protein kinase 124 353 - -
Rops3g00879 374 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Rops3g00879 374 FunFam Mitogen-activated protein kinase 25 134 - -
Rops3g00879 374 Pfam Protein kinase domain 44 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00879 374 Gene3D Transferase(Phosphotransferase) domain 1 124 353 - -
Rops3g00879 374 Gene3D Phosphorylase Kinase; domain 1 23 363 - -
Rops3g00879 374 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 39 327 - -
Rops3g00879 374 SUPERFAMILY Protein kinase-like (PK-like) 43 332 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00879 Rops-Chr3 10985864 10989182 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00879 14 367 MAP Kinase Gene Family AT1G07880 80.508 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Rops3g00879 Pkinase 7.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00879 K04371 - gmx:100802929 720.694