Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00877 ATGAACAATAATGTTGGGAAAAGAAGTTTGGCAGAACAAAATCACATGTTTTTGGACAAAAAGAATATCAATAACGGAGTAGTTAATGGAGGGCTAGGCTCTGGATCATCAACTGAAGATGACACGAGATTTAATAAGGTAAACCAAGAAGGAAACAATGGGTTGAGGGGACTGATTCAAATCCATGAGAGCTTGCAGATTTCGCAACAACCACCTCAAGGTCCAGTCGTATGCTGGGAGAGATTTCTTCCTGTAAGATCAATAAAAGTTCTTCTTGTGGAAGATGATGATCCAACACGCCATGTTGTACGCGCTCTGTTACGGAATTGTGGTTATGAAGTCACTGCTGTGGCCAATGGTCTTCAAGCGTGGAAAATCCTAGAAGATCCTGGAAATCACATTGATCTTGTCCTAACAGAGGTAGCTATACCTATTTTATCTGGACTAGGTCTATTGTGCAAGATCATGAGCCACAAAACTCTGAAGAATATCCCTGTGATTATGATGTCATCTCATGATTCAATGGGTATAGTCTTCAAGTGTTTGTCAAAAGGCGCAGTTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAACCTCTGGCAGCATGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGTGAAAGTGGGACACACACCAGAAAATTTGTAAAGTCAAGAAGTAATGATGCGTCTGAAAAATATAGTGACAGCAGTGATGAGAATGACTATGGAAGCAGAGGCTTGAGTGTTCGAGATGGAAGTGACAACGGAAGTGGTACTCAGAGTTCATGGACTAAATGTCTAGCTCAAGTTGGCAGTCCTCGTCCAGTTTCACCTCATAAACAATTGATTGATGCCCCTGATAGCACGTGTGCCCAAGTGATGCATACAAAGCCTGAAAAAGTTAGTAGTATACGGGTCCATGCGATAGAAGAGTGTCATGAACTGATTGATCATCTTGATGATGTTGCAATGGGTAAAGACTTGGCTATGGGAATATCTTTGAATATGCAACCAAAGCATCCACTTGAGGAACTGTCTAGCAATCCAATGGGTAAAGGGATAAATAATATGTCTGATATAGATGTTATGCAGCTAATTAAAGGACAGAGTAATGTCTGTGAAAAAGGACAGCTGGAGTACAACGGTGATAAAACCAGGACACAGGAAAATCAGGCTATGAATGTTGTTGATGTTACTGATAGCAACAGTCCACAGGCTGAAAGCAGAGACTTGAACACTCCGAATGGATTTTCTGGTTTCTCACAAACAAAAACAAGTTGTTGCTTCAAACAGCATCCATCCCTTGAACTAACCTTGAAAAGGCAGGGAGAAGTGAGAGATGTTAAAAATGTCACAAGTGATGAATGCAATGTTTTGAGACATTCAGATCTGTCAGCATTCTCAAAATATAATACTGCTTCTTCTGCTAATCAGGCTCAAACTGGAAATGTAGGAAGCTGTTCCCGGCTAGACAATAGCTCAGTTGCACCAAATACAGAAACAATACACAACTTTCCATCTCATTCAAATTGCACTGCTCCAAATCAACAGTCTAATGGGAGCAATAACATCAATGACATGGCCTCCACTAATCTTAGCACCAAACCTGAAACTTTTGACAAGAAGCCAGAGTCTGGAAGAGGGATTGGCTTGTTTAATTCTTCTGAACTCCAAACTGTGCAGATCAATTGTATCTCTTCATCTCAGAAGAAAACTTCTGCTCGGGAAGAATATGCAGAAATCATTAAAGGACAATTGGGAGGCTCTATACAAGGATTCCAAGTCGAGTCCACTCACTATCAGCTTCACCATTATAATCACATTGCCCACAAAGCTGCTGTAGATGTCCGGTCAGACCGTGATATCTTACTTGAAAGCTCGACCAAAGCTGCTCAGCAATGTGTATCATCAAATGCGTTTGGACCAGCAGAAAGTAATGCTGCAAACTACGGTGATGGAAATGCAGCTGAGAGCGATCATGGGAGCAATGGACAGGACGGAAACAATTCCTTGACAATCAGAACAATGAATGAGGAAAACGGCAATGTGGCAGCTGGGGGCTTTGGAGTTGGTGGAATGGATAGGAAAAACTTTGCGAATGGGGCAGATGAAGGACGAATTTCATTGAGAGAGGCTGCCTTGACCAAATTTCGTCAGAAGAGAAAAGAAAGATGCTTTGAGAAAAGGGTTCGATATCACAGCAGGAAAAAACTAGCAGAACAGCGGCCTCGTATTAGAGGGCAATTTGTACGACAAATAGTGTCTGATACCAAAGAAGAAAAAGATGAACAAAGCCACAATTTGGTATCTATAGATAATTCTAGCGACGTTCCACAATAA 2358 0.4135 MNNNVGKRSLAEQNHMFLDKKNINNGVVNGGLGSGSSTEDDTRFNKVNQEGNNGLRGLIQIHESLQISQQPPQGPVVCWERFLPVRSIKVLLVEDDDPTRHVVRALLRNCGYEVTAVANGLQAWKILEDPGNHIDLVLTEVAIPILSGLGLLCKIMSHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESGTHTRKFVKSRSNDASEKYSDSSDENDYGSRGLSVRDGSDNGSGTQSSWTKCLAQVGSPRPVSPHKQLIDAPDSTCAQVMHTKPEKVSSIRVHAIEECHELIDHLDDVAMGKDLAMGISLNMQPKHPLEELSSNPMGKGINNMSDIDVMQLIKGQSNVCEKGQLEYNGDKTRTQENQAMNVVDVTDSNSPQAESRDLNTPNGFSGFSQTKTSCCFKQHPSLELTLKRQGEVRDVKNVTSDECNVLRHSDLSAFSKYNTASSANQAQTGNVGSCSRLDNSSVAPNTETIHNFPSHSNCTAPNQQSNGSNNINDMASTNLSTKPETFDKKPESGRGIGLFNSSELQTVQINCISSSQKKTSAREEYAEIIKGQLGGSIQGFQVESTHYQLHHYNHIAHKAAVDVRSDRDILLESSTKAAQQCVSSNAFGPAESNAANYGDGNAAESDHGSNGQDGNNSLTIRTMNEENGNVAAGGFGVGGMDRKNFANGADEGRISLREAALTKFRQKRKERCFEKRVRYHSRKKLAEQRPRIRGQFVRQIVSDTKEEKDEQSHNLVSIDNSSDVPQ* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00877 785 PANTHER TWO-COMPONENT RESPONSE REGULATOR 89 390 IPR045279 GO:0009736
Rops3g00877 785 MobiDBLite consensus disorder prediction 648 679 - -
Rops3g00877 785 CDD psREC_PRR 90 193 - -
Rops3g00877 785 ProSiteProfiles Response regulatory domain profile. 89 207 IPR001789 GO:0000160
Rops3g00877 785 Pfam Response regulator receiver domain 90 201 IPR001789 GO:0000160
Rops3g00877 785 MobiDBLite consensus disorder prediction 211 268 - -
Rops3g00877 785 Pfam CCT motif 716 758 IPR010402 GO:0005515
Rops3g00877 785 MobiDBLite consensus disorder prediction 762 785 - -
Rops3g00877 785 ProSiteProfiles CCT domain profile. 716 758 IPR010402 GO:0005515
Rops3g00877 785 MobiDBLite consensus disorder prediction 224 245 - -
Rops3g00877 785 Gene3D - 87 242 - -
Rops3g00877 785 SMART REC_2 88 203 IPR001789 GO:0000160
Rops3g00877 785 FunFam Two-component response regulator-like PRR37 88 246 - -
Rops3g00877 785 SUPERFAMILY CheY-like 86 212 IPR011006 -
Rops3g00877 785 MobiDBLite consensus disorder prediction 662 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00877 Rops-Chr3 10955866 10970857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00877 35 493 Response Regulator Gene Family AT5G60100 45.957 1.14e-95 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Rops3g00877 Response_reg 3.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00877 K12129 - gmx:100785796 1076.23