Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00876 ATGGGTTGCTTTTGTTTCTCAGGCAAATCAAGTGAAAAATCGGTGACAAGAGACTATAGCCACACCCAAAAGCCCACCAATAACACTGCCACAGATAAGGTAAAAGTTGATGCCAAAGTAAATGGGAAAAAAGAAGATGGTTCTAAGGATGATCAACTTGCTCTGGATGTGAAGAATTTAAATTTAAACGGGCAGGATGGAAAAGATAATCCTAACCGGGCACAAACATTCAGTTTTGATGAACTTAAAGTTGCAACTGGAAATTTTAGATCAGATTGCTTTTTGGGTGAAGGAGGCTTTGGCAAGGTTTACAAGGGGCACTTGGATAGAATAAACCAGGTTGTAGCTATAAAGCAACTTGACCCCAATGGACTTCAAGGAATTCGGGAATTTGTTGTTGAAGTGTTGACATTGAGTTTGGCAGACCACCAAAATCTTGTCAAATTGCTTGGATTTTGTGCTGAGGGAGAGCAGAGGCTATTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGAACCATTTGCTCGATCTTCCACCTGGTAGAAAACCACTTGATTGGAATACAAGAATGAAAATAGCAGCTGGTGCGGCTAGGGGTTTGGAGTATCTGCATGATGAAATGAAGCCTCCTGTCATATATCGTGACTTGAAATGCTCTAACATTTTGTTAGGCGAGGGATATCATCCCAAATTATCTGATTTTGGCTTGGCAAAAGTAGGCCCAAGTGGTGATAAGACCCATGTTTCGACAAGGGTTATGGGCACATACGGGTACTGTGCCCCAGATTATGCAATGACAGGTCAGTTGACATTCAAGTCAGATATTTACAGCTTCGGAGTTGTTCTTTTGGAGCTCATCACAGGCAGGAAAGCTATTGATCATACAAAATCTGGCAAAGAACAAAATCTGGTTGCATGGGCAAGACCTTTATTCAGAGACAGGAGAAAATTCTCACAAATGGTTGATCCATTGCTTGAAGGTCAATATCCCGTGAGAGGTTTATACCAAGCTCTTGCTATTGCTGCAATGTGTGTTCAAGAGCAGCCTAATATGCGGCCTGTTATAGTTGATGTGGTCACAGCTCTAAATTACCTTGCTTCCCAGAAGTATGACCCCGCAATTCATTCAGCACAAAGATCTAAAAGTCCACCTTCTCCAAGAGTGAGAAGAAGGGACGATGATCAAAAACATAGTTTTAGTGATGAGAATGAGACAGACAGATCAGTAAGCTAA 1236 0.4159 MGCFCFSGKSSEKSVTRDYSHTQKPTNNTATDKVKVDAKVNGKKEDGSKDDQLALDVKNLNLNGQDGKDNPNRAQTFSFDELKVATGNFRSDCFLGEGGFGKVYKGHLDRINQVVAIKQLDPNGLQGIREFVVEVLTLSLADHQNLVKLLGFCAEGEQRLLVYEYMPLGSLENHLLDLPPGRKPLDWNTRMKIAAGAARGLEYLHDEMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTKSGKEQNLVAWARPLFRDRRKFSQMVDPLLEGQYPVRGLYQALAIAAMCVQEQPNMRPVIVDVVTALNYLASQKYDPAIHSAQRSKSPPSPRVRRRDDDQKHSFSDENETDRSVS* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00876 411 FunFam probable serine/threonine-protein kinase RLCKVII 51 165 - -
Rops3g00876 411 ProSiteProfiles Protein kinase domain profile. 89 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00876 411 FunFam Serine/threonine-protein kinase PBS1 166 381 - -
Rops3g00876 411 Gene3D Phosphorylase Kinase; domain 1 47 165 - -
Rops3g00876 411 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Rops3g00876 411 MobiDBLite consensus disorder prediction 1 49 - -
Rops3g00876 411 MobiDBLite consensus disorder prediction 386 411 - -
Rops3g00876 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Rops3g00876 411 MobiDBLite consensus disorder prediction 374 411 - -
Rops3g00876 411 PANTHER OS07G0668900 PROTEIN 27 375 - -
Rops3g00876 411 SUPERFAMILY Protein kinase-like (PK-like) 75 386 IPR011009 -
Rops3g00876 411 SMART serkin_6 89 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00876 411 Gene3D Transferase(Phosphotransferase) domain 1 166 383 - -
Rops3g00876 411 CDD STKc_IRAK 95 364 - -
Rops3g00876 411 MobiDBLite consensus disorder prediction 20 34 - -
Rops3g00876 411 Pfam Protein kinase domain 94 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00876 Rops-Chr3 10939411 10943835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00876 1 387 Glycoside Hydrolase AT3G07070 54.615 3.74e-147 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Rops3g00876 Pkinase 7.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00876 - - gmx:100804000 704.901