Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00873 ATGGAAGCATTTCAAAGAGACCCTCGTGAATCATTGGAAGTGTTCAACCCTTCAGCTTCATATTCAAATGAGAAGCCAGTGAATTCGCCGTTACGGTCACAACCATCGTGGAAAACGTGGATAGAACCACGCGCCGATGAGCCTCCACCGCCGCCACGTGATGCCAGCTCTGATGAAGTCTCCGGCGCCGGTGCGGGCACGTCATGGATGGCACTCAAGGAACATACTCCTCCGACTACCCCAACGCTTGCCACCGTCCTCGGCGAGGCTCCACCGGCCTCCGGAGAATCCGGCACGGCGGCGGCGCAGAGGGCTGCGGAGTGGGGGTTGGTGCTGAAAACGGACACGGAGACAGGGAAGCCGCAGGGAGTGGCGGTTCGGAATTCCGGCGGGTCGAGGAGGGACTCGAATAACTCCGTTAGGAGCTCCGGCGAGTCTTCCGATGACGGTAGGGAAATCCGGGGAATACCGAGGGTTTCGGAGGACTTGAGGGATGCTTTGTCGGCGTTTCAACAAACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATTATGTATGCCAGTGCCGGGTTCTTTAAGATGACGGGTTATACCTCCAAAGAAGTCATAGGAAGAAACTGTCGGTTTTTACAGGGAGCAGAAACGGATCCTGATGACGTGGCAAAGATAAGAGAAGCCTTACAAGCAGGAACTAGTTATTGTGGAAGGTTACTGAATTACAAGAAAGATGGGACACCCTTTTGGAACCTTCTTACTATTACACCAATCAAGGATGACCAAGGCAAAGTCCTCAAATTTATCGGAATGCTAGTGGAGGTTAGCAGGCATACGGAGGGATTCAAGGAGAAGATGTTACGTCCCAATGGATTACCCGAATCCTTGATTCGATATGATGCTCGTCAGAAAGAGAAGGCAAGGTCTTCAGTATCTGAGTTGGTGCTAGCCGTGAGAAGGCCACGTGCTCTAAGTGAATCAGCAAACCGTCCCTTTATCAAAAAACCATCACTTAGTGATGATAATGCAAAAGAGAAAACAGAGAAACTAGCAAGGAGAAAATCAGAGAGTGTGGCTTCATTTAGACGTAAGTCACATGCAGGGGACTCAAATTCAATGCAAAGAATCATTGAGCATCCTGAAAAGAAAAACAAGAACTCACGTCGTCGTTCTTTCATGGGGCTCATTAGGAAAAGTAAGTCCAATTATGAAAGCTTCAATGATGAAGAAGTTGTTGAGGACAGTTCTTATGAGGGTAGTGAGGATGATGAGAGGCCTGATAGCTTTGATGAAAAAATACAGAAGAAGGAAAAGAGAAAGGGAATGGATCTTGCTACTACACTTGAACGTATAGAGAAGAACTTTGTCATTACTGATCCAAGGCTGCCTGATAACCCCATTATATTTGCATCTGATAGCTTCTTAGAGCTCACAGAGTATAGTAGAGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTACAAGGACCTGAAACTGATCCAGCAACTGTGAGAAAAATTAGAGAGGCTATTGACACTCAAACAGAAGTTACCGTGCAGCTCATCAATTATACAAAGAGTGGTAAAAAGTTCTGGAACTTGTTTCATTTGCAACCAATGCGTGATCAGAAGGGAGAGGTACAATATTTTATTGGAGTTCAACTTGATGGTAGTCAACATGTGGAGCCTCTTCACAACCGCATTGCAGATGATACTGCAAAGGAGGGAGAACAATTGGTAAAACAAACTGCAGAAAATGTTGATGATGCACTGAGAGAACTTCCAGATGCTAATATGAAACCAGAAGATCTATGGATGAATCATTCCAAAATGGTTCACCCCAAACCTCATAGGAAGGATGAAGCTGCTTGGAGAGCCATTCAGAAGATCCTAGATACTGGAGAACAGATAGGTTTGAAGCATTTTAGACCAATTAAACCTTTGGGATCAGGAGATACTGGCAGTGTCCATTTGGTGGAGCTATGTGGAACTGGTCAACATTTTGCCATGAAGGCTATGGAGAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAAATTCTTGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACTGATTACTGTGCTGGAGGAGAACTATTCCTGCTTCTTGACAGACAGCCTGCAAAGGTTCTCAAGGAAGATGCAGTGAGATTTTATGCTGCTGATGTAGTTGTGGCATTGGAGTACCTTCATTGTCAAGGGATAATATATCGGGATTTGAAGCCAGAGAATGTGTTACTCCAAAGCAGTGGACATGTGTCTCTAACTGATTTTGATTTGTCATGTTTAACATCTTCCAAACCACAGCTTCTAATTCCAGCTACAAATGAAAAGAAGAAACAACAGAAAGGCCAGCAGGCTCCAATATTTATGGCTGAACCTATGAGAGCTTCAAATTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGAAATTATAACGGGTTCAGGTCATACTAGTGCTGTGGATTGGTGGGCACTTGGAATTCTTCTATATGAAATGTTTTATGGGTATACACCATTCAGGGGAAAGACGAGGCAAAGAACATTTACAAATATTCTCCACAAGGATCTTAAATTTCCCAAAAGTAAACAGGTAAGTCTCAGTGCAAAGCAGTTAATATACCGGTTGTTGCAGAGAGACCCCAAAATGAGATTGGGTTCAAGGGGAGGAGCAAATGAAATTAAGCAACATCCCTTCTTCAGGGGTGTCAACTGGGCCTTAGTTCGTTGCACGAAACCTCCTGAGCTTGATGCTCCTCTCTTTGAGACAACTGAAGAAGAAAAAGCCAAATATGTAGATCCTGGGCAAGAGGATATGAATGTCTTCTGA 2913 0.4466 MEAFQRDPRESLEVFNPSASYSNEKPVNSPLRSQPSWKTWIEPRADEPPPPPRDASSDEVSGAGAGTSWMALKEHTPPTTPTLATVLGEAPPASGESGTAAAQRAAEWGLVLKTDTETGKPQGVAVRNSGGSRRDSNNSVRSSGESSDDGREIRGIPRVSEDLRDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGAETDPDDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTITPIKDDQGKVLKFIGMLVEVSRHTEGFKEKMLRPNGLPESLIRYDARQKEKARSSVSELVLAVRRPRALSESANRPFIKKPSLSDDNAKEKTEKLARRKSESVASFRRKSHAGDSNSMQRIIEHPEKKNKNSRRRSFMGLIRKSKSNYESFNDEEVVEDSSYEGSEDDERPDSFDEKIQKKEKRKGMDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDTQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIADDTAKEGEQLVKQTAENVDDALRELPDANMKPEDLWMNHSKMVHPKPHRKDEAAWRAIQKILDTGEQIGLKHFRPIKPLGSGDTGSVHLVELCGTGQHFAMKAMEKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCAGGELFLLLDRQPAKVLKEDAVRFYAADVVVALEYLHCQGIIYRDLKPENVLLQSSGHVSLTDFDLSCLTSSKPQLLIPATNEKKKQQKGQQAPIFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMFYGYTPFRGKTRQRTFTNILHKDLKFPKSKQVSLSAKQLIYRLLQRDPKMRLGSRGGANEIKQHPFFRGVNWALVRCTKPPELDAPLFETTEEEKAKYVDPGQEDMNVF* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00873 970 SUPERFAMILY PYP-like sensor domain (PAS domain) 456 555 IPR035965 -
Rops3g00873 970 FunFam Putative LOV domain-containing protein 173 329 - -
Rops3g00873 970 PANTHER FLIPPASE KINASE 1-RELATED 439 951 - -
Rops3g00873 970 MobiDBLite consensus disorder prediction 121 144 - -
Rops3g00873 970 Pfam Protein kinase domain 643 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00873 970 MobiDBLite consensus disorder prediction 15 36 - -
Rops3g00873 970 FunFam LOV domain-containing protein 640 724 - -
Rops3g00873 970 ProSitePatterns Protein kinases ATP-binding region signature. 647 670 IPR017441 GO:0005524
Rops3g00873 970 ProSiteProfiles Protein kinase domain profile. 641 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00873 970 Gene3D PAS domain 173 330 - -
Rops3g00873 970 ProSiteProfiles PAS repeat profile. 440 513 IPR000014 -
Rops3g00873 970 MobiDBLite consensus disorder prediction 408 425 - -
Rops3g00873 970 FunFam Putative LOV domain-containing protein 725 940 - -
Rops3g00873 970 Pfam PAS domain 463 555 IPR000014 -
Rops3g00873 970 Pfam PAS domain 180 276 IPR000014 -
Rops3g00873 970 MobiDBLite consensus disorder prediction 407 440 - -
Rops3g00873 970 MobiDBLite consensus disorder prediction 326 390 - -
Rops3g00873 970 MobiDBLite consensus disorder prediction 1 154 - -
Rops3g00873 970 CDD STKc_phototropin_like 639 947 - -
Rops3g00873 970 ProSiteProfiles PAC domain profile. 233 287 IPR000700 -
Rops3g00873 970 CDD PAS 186 275 IPR000014 -
Rops3g00873 970 SMART pac_2 236 278 IPR001610 -
Rops3g00873 970 SMART pac_2 517 559 IPR001610 -
Rops3g00873 970 Coils Coil 572 592 - -
Rops3g00873 970 Gene3D PAS domain 429 593 - -
Rops3g00873 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 762 774 IPR008271 GO:0004672|GO:0006468
Rops3g00873 970 SUPERFAMILY PYP-like sensor domain (PAS domain) 180 272 IPR035965 -
Rops3g00873 970 Gene3D Transferase(Phosphotransferase) domain 1 725 940 - -
Rops3g00873 970 NCBIfam PAS domain S-box protein 186 278 IPR000014 -
Rops3g00873 970 NCBIfam PAS domain S-box protein 465 555 IPR000014 -
Rops3g00873 970 ProSiteProfiles PAS repeat profile. 159 230 IPR000014 -
Rops3g00873 970 SMART pas_2 442 511 IPR000014 -
Rops3g00873 970 SMART pas_2 161 230 IPR000014 -
Rops3g00873 970 FunFam LOV domain-containing protein 429 593 - -
Rops3g00873 970 MobiDBLite consensus disorder prediction 337 363 - -
Rops3g00873 970 ProSiteProfiles PAC domain profile. 514 568 IPR000700 -
Rops3g00873 970 Gene3D Phosphorylase Kinase; domain 1 640 724 - -
Rops3g00873 970 SMART serkin_6 641 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00873 970 MobiDBLite consensus disorder prediction 426 440 - -
Rops3g00873 970 SUPERFAMILY Protein kinase-like (PK-like) 626 948 IPR011009 -
Rops3g00873 970 CDD PAS 455 555 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00873 Rops-Chr3 10893321 10907680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00873 6 970 AGC Kinase Gene Family AT3G45780 71.558 0.0 1352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Rops3g00873 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00873 K20715 - gmx:100804524 1603.57