Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00866 ATGGATACACACTACAACACCGCATTCTCACGCGCCGCCGATTCCCTCAGCCATTTTCCGTCGCCCCCGGATGCTTCACCAATGCAATACTCAACCACTCCTCAGCAGCAGCACTGCTACCCACTTGCCCTCGGCGAGTTCGACTCAGTTTCGCAACTCAACTCGGAGGTGAGTTCCAATACGAATAACAGTTGTTGCAGCAGCTACATGGGGTCCCCGAGTTCGCTGGCGAGTCACGAGACTCAACGAGTCTGCTTGATGCAGAGGAGTGTTAGTAGCCACTCGTTGCAGAAGAATACTGGGGCCCACCACCCCTTTTCTCCTCTCTTTGCTGAGTTGCTTGACTCGGAGAACAGTCCGGTTCGGCGAGTTTACAGTACCGGTGATTTGCAGAGAATTAATGGAATGCAACAATATCATCAGTCAGATAGTCCATTGTCAATAGAGAGTAGTATGATAATAGAAGCAATGAGCAGAGCCAGTCCTTACAGCCCAGAGGAGAAGAAGGTGAGGATTGAAAGATATAGAAGCAAGAGAAACCAGAGGAACTTCACCAAGAAAATCAAGTATGCTTGTAGGAAGACATTGGCAGACAGCAGGCCACGTATAAGAGGAAGATTTGCAAGGAATGATGAAATAGTAATGAACCCTCCTGTTCAATGGAGCCAAATTGGTACAGGTGAGGAAGAAGATGAGGAAGATGAGAATTGGGCTAATTTCTTTGATTCCTTTGTGCCTGCAAATCTTGCTCAGGATTAA 759 0.4769 MDTHYNTAFSRAADSLSHFPSPPDASPMQYSTTPQQQHCYPLALGEFDSVSQLNSEVSSNTNNSCCSSYMGSPSSLASHETQRVCLMQRSVSSHSLQKNTGAHHPFSPLFAELLDSENSPVRRVYSTGDLQRINGMQQYHQSDSPLSIESSMIIEAMSRASPYSPEEKKVRIERYRSKRNQRNFTKKIKYACRKTLADSRPRIRGRFARNDEIVMNPPVQWSQIGTGEEEDEEDENWANFFDSFVPANLAQD* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00866 252 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 28 236 IPR045281 GO:0009909
Rops3g00866 252 Pfam CCT motif 170 210 IPR010402 GO:0005515
Rops3g00866 252 MobiDBLite consensus disorder prediction 14 35 - -
Rops3g00866 252 ProSiteProfiles CCT domain profile. 168 210 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00866 Rops-Chr3 10674075 10676320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00866 159 209 C2C2-CO-like Transcription Factor Family AT5G24930 52.941 1.30e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops3g00866 CCT 1.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00866 - - aprc:113859774 384.415