Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00854 ATGCCTCCTGCTGTCGAGAGGCTTGCTAGGAAATATTTGAGGAACCTTGTTGTGGTAGGTACTGCTGGAAAAGCAACTGACTTGATTGGCCAGCACCCTCACCTGTGGGACAGTAGTTGTAGAAGAGAAGGGCAAGCTCGCAAAGGAAGGCAAGGAGGTTATGACAAAGAAGAAAAGTTAGCAGCACTCAAGTACTGGGGAACAGCTACAACAACAAATTTTCCGATTAGCCACTATGAAAAAGAATTTGAAGAAATGAAGCGCATGACAAGGCAAGAGCACGTTGCGTCACTGAGAAGGAAGGGTGGTGGGTTTTCTCGTGGTGCATCCATTTATCGAGGAGTAACGAGGCATCACCAACATGGTAGATGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACGAAGACCTCTACCTTGGCACTTTCAGTACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCAGGTACCAAATTCAGAGGACTAAATGCAGTGACTAACTTTGACATGAGTCGCTACGACGTGAAGAGCATTGCAAATAGCACTCTTCCCATTGGTGGTTTTTCTAGCAAGAACAAAAATTCCACAGATTCTGTATCAGAGAGCAAAAGCCATGAGGCAAGTCGATCAGATGAACGAGATCCATCTTCAGCTTCATCTGGTACCTTTGCATCACAGCAACCTTCAAGTTCTACCCTAAGCTTTGCCATACCCATCAAACAAGACCCTTCAGATTACTGGTCCATCCTCGTTTACCATAATAATAATAATAATACTCCTCTTGACAGTGCCGTAAGAAACACTAGTGTTACCACAACTATTACTTTTCCATCTTCCAACCATGGCACTGGTTTTCAGTCTAACAGGCTCTTGTTTGCCTCAACTTTTGCTTAG 894 0.4485 MPPAVERLARKYLRNLVVVGTAGKATDLIGQHPHLWDSSCRREGQARKGRQGGYDKEEKLAALKYWGTATTTNFPISHYEKEFEEMKRMTRQEHVASLRRKGGGFSRGASIYRGVTRHHQHGRWQARIGRVAGNEDLYLGTFSTQEEAAEAYDIAGTKFRGLNAVTNFDMSRYDVKSIANSTLPIGGFSSKNKNSTDSVSESKSHEASRSDERDPSSASSGTFASQQPSSSTLSFAIPIKQDPSDYWSILVYHNNNNNTPLDSAVRNTSVTTTITFPSSNHGTGFQSNRLLFASTFA* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00854 297 MobiDBLite consensus disorder prediction 214 229 - -
Rops3g00854 297 Pfam AP2 domain 111 159 IPR001471 GO:0003700|GO:0006355
Rops3g00854 297 Gene3D AP2/ERF domain 111 171 IPR036955 GO:0003700|GO:0006355
Rops3g00854 297 FunFam AP2-like ethylene-responsive transcription factor 110 171 - -
Rops3g00854 297 ProSiteProfiles AP2/ERF domain profile. 111 169 IPR001471 GO:0003700|GO:0006355
Rops3g00854 297 SMART rav1_2 111 175 IPR001471 GO:0003700|GO:0006355
Rops3g00854 297 SUPERFAMILY DNA-binding domain 110 171 IPR016177 GO:0003677
Rops3g00854 297 MobiDBLite consensus disorder prediction 198 213 - -
Rops3g00854 297 CDD AP2 110 171 IPR001471 GO:0003700|GO:0006355
Rops3g00854 297 MobiDBLite consensus disorder prediction 184 229 - -
Rops3g00854 297 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 34 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00854 Rops-Chr3 10482834 10487882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00854 34 248 AP2-EREBP Transcription Factor Family AT5G57390 67.391 6.65e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops3g00854 AP2 4.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00854 K09285 - gmx:100797828 414.461