Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00853 ATGCCTCCTGCTGTCGAGAGGCTTGCTAGGAAATATTTGAGGAACCTTGTTGTGCCTCACCTGTGGGACAGTAGTTGTAGAAGAGAAGGGCAAGCTCGCAAAGGAAGGCAAGGAGGTTATGACAAAGAAGAAAAGTTAGCAGCACTCAAGTACTGGGGAACAGCTACAACAACAAATTTTCCGATTAGCCACTATGAAAAAGAATTTGAAGAAATGAAGCACATGACAAGGCAAGAGCACGTTGCGTCACTGAGAAGGAAGGGCGGTGGGTTTTCTCGTGGTGCATCCATTTATCGAGGAGTAACGAGGCATCACCAACATGGTAGATGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACGAAGACCTCTACCTTGGCACTTTCAGTACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCAGCTACCAAATTCAGAGGACTAAATGCAGTGACTAACTTTGACATGAGTCGCTACGACGTGAAGAGCATTGCAAATAGCACTATTCCCATTGGTGGTTTTTCTAGCAAGAACAAAAATTCCACAGATTCTGTATCAGAGAGCAAAAGCCATGAGGCAAGTCGATCAGATGAACGAGATCCATCTTCAGCTTCATCTGGTACCTTTGCATCACAGCAACCTTCAAGTTCTACCCTAAGCTTTGCCATACCCATCAAACAAGACCCTTCAGATTACTGGTCCATCCTCGGTTACCATAATAATAATAATAATACTCCTCTTGACAGTGCCGTAAGAAACACTAGTGTTACCACAACTATTACTTTTCCATCTTCCAACCATGGCACTGAGGTTAAGAAGGATGCATCCGAACATATCTATAAAGATAAAGGCACCTTCATTCCCGTTGCACAACTTAGTCTTTCCTTGTCCATTCTCGATGTGGGGAACAGACGTCATCGGACCAGTAATCCAAAAGCATTGAATGAACACCATTTCATTTTGGTGGAAATTGATCACCTCACCAAATGGATCGAAGCATCTTCATACGCTAGTATTTCTCAGAAAATGTTTGCTAAGTTTCTCAAAAGGGACATTATCTGCCGATATGAAATTCCAGAAAGAATAATCACAGATAATGCACCTAACCTTAATGGCTCAGAGATACAGAAGCCTTGTGAACATTTCAAGATCAAACATCACAACTTGGCTCCTTACATTGATCCGACAAGACAGGGAAGAAAATGA 1206 0.4303 MPPAVERLARKYLRNLVVPHLWDSSCRREGQARKGRQGGYDKEEKLAALKYWGTATTTNFPISHYEKEFEEMKHMTRQEHVASLRRKGGGFSRGASIYRGVTRHHQHGRWQARIGRVAGNEDLYLGTFSTQEEAAEAYDIAATKFRGLNAVTNFDMSRYDVKSIANSTIPIGGFSSKNKNSTDSVSESKSHEASRSDERDPSSASSGTFASQQPSSSTLSFAIPIKQDPSDYWSILGYHNNNNNTPLDSAVRNTSVTTTITFPSSNHGTEVKKDASEHIYKDKGTFIPVAQLSLSLSILDVGNRRHRTSNPKALNEHHFILVEIDHLTKWIEASSYASISQKMFAKFLKRDIICRYEIPERIITDNAPNLNGSEIQKPCEHFKIKHHNLAPYIDPTRQGRK* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00853 401 Gene3D - 305 399 IPR036397 GO:0003676
Rops3g00853 401 SUPERFAMILY DNA-binding domain 96 157 IPR016177 GO:0003677
Rops3g00853 401 SUPERFAMILY Ribonuclease H-like 313 392 IPR012337 -
Rops3g00853 401 MobiDBLite consensus disorder prediction 200 215 - -
Rops3g00853 401 MobiDBLite consensus disorder prediction 184 199 - -
Rops3g00853 401 ProSiteProfiles Integrase catalytic domain profile. 284 401 IPR001584 GO:0015074
Rops3g00853 401 Gene3D AP2/ERF domain 97 157 IPR036955 GO:0003700|GO:0006355
Rops3g00853 401 ProSiteProfiles AP2/ERF domain profile. 97 155 IPR001471 GO:0003700|GO:0006355
Rops3g00853 401 FunFam AP2-like ethylene-responsive transcription factor 96 157 - -
Rops3g00853 401 Pfam AP2 domain 97 147 IPR001471 GO:0003700|GO:0006355
Rops3g00853 401 SMART rav1_2 97 161 IPR001471 GO:0003700|GO:0006355
Rops3g00853 401 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 20 217 - -
Rops3g00853 401 MobiDBLite consensus disorder prediction 170 215 - -
Rops3g00853 401 CDD AP2 96 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00853 Rops-Chr3 10475071 10482466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00853 20 241 AP2-EREBP Transcription Factor Family AT5G57390 66.807 1.91e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops3g00853 AP2 5.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00853 K09285 - gmx:100797828 419.083