Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00836 ATGAACATCCTTCCTAAGGAGCTTTCGCTATGGAAACTAGGAATTGTTTGTTCAATTATAATAGTGTGGCTTATCTTCTGTACATTTATTTACCATGGCATATTTAAGCGTCTCTTCCTGAGGATTTGCCGTGCAATCACCACTCGAAACCATGTTCAAAGGCAACCTTTACATGAGTCCAGTTCCAATCCCAATAATAATCCTTCTCTACAGCTTGAAAACCGTGGATTGGAGTTCTCTGTGGTACACACTCTTCCCATATCTCAGTTTAAGAAAAATGAGGGTGAACATGGGCCAATTAATGCTGATTGTGCTATTTGCCTGGGAGAGTTTGAAGAAGGGGAATGGCTAAAACATCTTCCAATCTGCACCCATGTCTTTCATGCTTCCTGCATTGATACATGGTTTCAGTCTCTTTCAAATTGTCCCCTCTGCAGAGGTTATGTCCATCTTGACCTCCCTGTCCCTGCCAACCTCTGA 480 0.4229 MNILPKELSLWKLGIVCSIIIVWLIFCTFIYHGIFKRLFLRICRAITTRNHVQRQPLHESSSNPNNNPSLQLENRGLEFSVVHTLPISQFKKNEGEHGPINADCAICLGEFEEGEWLKHLPICTHVFHASCIDTWFQSLSNCPLCRGYVHLDLPVPANL* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00836 159 Pfam Ring finger domain 103 146 IPR001841 -
Rops3g00836 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 150 IPR013083 -
Rops3g00836 159 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Rops3g00836 159 SUPERFAMILY RING/U-box 103 153 - -
Rops3g00836 159 SMART ring_2 104 145 IPR001841 -
Rops3g00836 159 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 17 147 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00836 Rops-Chr3 10228198 10228677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00836 19 156 C3H Transcription Factor Family AT3G10910 34.043 2.52e-20 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00836 - - aprc:113859782 184.882