Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00834 ATGCCGATTTCTAAAATTGCCATTGGAAATCCTTCAGAGTTGGGCAAACCTGATGCCCTTAAGGCTGCTCTTGCTGAGTTCATCTCAATGCTCATCTTTGTCTTTGCAGGGGAAGGCTCTGGCATGGCATATAATAAGCTCACAGACAATGGTTCAGCAACACCAGCTGGACTAGTAGCAGCATCACTGTCTCATGCATTTGCTCTTTTTGTTGCTGTCTCTGTTGGTGCTAACATCTCTGGTGGCCATGTCAACCCTGCTGTTACATTTGGTGCCTTTATTGGTGGTCACATTACCCTTCTCAGAGGCATTTTGTATTGGATTGCTCAGTTGCTTGGCTCTGTGGTTGCTTGCTTGCTCCTTAAATTTGCCACTGGTGGACTGGAAACATCTGCATTCTCATTGTCTTCTGGTGTGGGAGCAGGAAACGCACTTGTCTTTGAGATTGTGATGACTTTTGGTTTGGTTTACACTGTGTATGCCACTGCAGTGGACCCAAAGAAGGGTAACATTGGGATAATTGCTCCAATTGCAATTGGTTTCATTGTTGGTGCCAACATCTTGGCAGGTGGTGCCTTTGATGGTGCATCCATGAACCCAGCAGTGTCTTTTGGACCTGCTGTTGTTAGTGGAACTTGGGATAACCACTGGGTCTACTGGGCCGGCCCATTAATTGGTTCTGCTATTGCTGCTGTTGTCTATGACACTCTCTTCATCCCCTCAAGTTCTTATGAACAGATCCCCGTTGCAGATTATTAG 759 0.4625 MPISKIAIGNPSELGKPDALKAALAEFISMLIFVFAGEGSGMAYNKLTDNGSATPAGLVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFIGGHITLLRGILYWIAQLLGSVVACLLLKFATGGLETSAFSLSSGVGAGNALVFEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSGTWDNHWVYWAGPLIGSAIAAVVYDTLFIPSSSYEQIPVADY* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00834 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Rops3g00834 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Rops3g00834 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00834 252 FunFam Probable aquaporin TIP1-1 4 252 - -
Rops3g00834 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00834 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00834 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00834 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00834 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00834 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00834 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops3g00834 252 SUPERFAMILY Aquaporin-like 16 243 IPR023271 -
Rops3g00834 252 PANTHER AQUAPORIN-8 6 246 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00834 Rops-Chr3 10182352 10183519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00834 1 252 Major Intrinsic Protein MIP AT4G01470 79.762 3.57e-142 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00834 K09873 - gmx:100777419 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00748 7 10099914 10101085 Rops3g00834 3 10182352 10183519 PCT