Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00832 ATGGTTCAACAAGAACTCAGAAAAGGTCCTTGGACAGAACAAGAGGACTTCAAATTAGCCTATTTTGTTGGCTTATTTGGAGACCGTAGATGGGACTTTATAGCTAAGGTTTCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTACGTTGGGTTAATTACCTGCATCCTGATCTCAAACGAGGAAAGATGACACCCCAAGAAGAGCACCTTGTCATGGAGCTTCACTCCAAATGGGGAAATAGATGGTCAAGAATTGCTAGGAAACTACCAGGGCGTACAGATAATGAGATTAAGAATTATTGGAGGACTCTCATGAGGAAGAAAAAGGCACAAGAGAAAAAACGTGCAGCAGCTGCATCATCACCTGAATCTTCTAGTTGTCAATCTTCACTCTCCTCAAATAATCACGCTGTGGATTCACATGTGTCCAAAGAGGTTGGAGAAGAAAGCTTTTATGACACAGGTGGACCAAACAATATGATAGGCTTGAATGAAATTCATTTTGGGGGAGAAGGCCAAGATGGTTACTCTATGGATGATATATGGAAAGATATTGCTATGTCAGTGGATAATAACATTAATATGCAACCAGTTTATGATGGGTACAGTGAAGAGGGATGCAACTTTTCTTGTCCTCCAATGCCTTCTCCATCATGGGATTATGATTATTATTCTTCAGACTCCTTATGGGTGATGGATGGAGAAGAAAGTAAGATGTTATTCCCTATGAGTGATGAACAGTATTTTTCCTGCTATGATCAACAAGGGAACAGCACATTTCTAACAGGCTAA 795 0.4025 MVQQELRKGPWTEQEDFKLAYFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPDLKRGKMTPQEEHLVMELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKKAQEKKRAAAASSPESSSCQSSLSSNNHAVDSHVSKEVGEESFYDTGGPNNMIGLNEIHFGGEGQDGYSMDDIWKDIAMSVDNNINMQPVYDGYSEEGCNFSCPPMPSPSWDYDYYSSDSLWVMDGEESKMLFPMSDEQYFSCYDQQGNSTFLTG* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00832 264 MobiDBLite consensus disorder prediction 119 141 - -
Rops3g00832 264 Gene3D - 63 134 - -
Rops3g00832 264 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Rops3g00832 264 MobiDBLite consensus disorder prediction 112 154 - -
Rops3g00832 264 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Rops3g00832 264 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 118 IPR044676 GO:0003700|GO:0006355|GO:0043565
Rops3g00832 264 FunFam MYB transcription factor 63 131 - -
Rops3g00832 264 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Rops3g00832 264 CDD SANT 63 106 IPR001005 -
Rops3g00832 264 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Rops3g00832 264 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Rops3g00832 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Rops3g00832 264 CDD SANT 10 55 IPR001005 -
Rops3g00832 264 FunFam Myb transcription factor 8 60 - -
Rops3g00832 264 SMART sant 7 57 IPR001005 -
Rops3g00832 264 SMART sant 60 108 IPR001005 -
Rops3g00832 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Rops3g00832 264 Gene3D - 8 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00832 Rops-Chr3 10173597 10174917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00832 1 248 MYB Transcription Factor Family AT5G59780 58.203 6.66e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops3g00832 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00832 K09422 - gmx:100776886 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00832 3 10173597 10174917 Rops7g00749 7 10109023 10110212 PCT