Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00829 ATGAAGAGAGGCAGAGATGAAAAGGGTGAGGTAGATATGGCTAATTGTTTGATGTTACTATCCAAAGTTGGTGAAAGTTGCACCAACCCATCAAGAGATAGAGTTATGAAAGGTGGTGGTTTTAAGTGCAAGACTTGTAACAGGCAATTCCCATCGTTTCAAGCCCTTGGGGGCCATAGAGCCAGTCACAAGAAGCTAAAGCTTAGGGGTATGGACCTCTCATGCAAGTTACCAAGGTCATCCATGAAAACAAAGATGCACTCGTGCCCCATTTGTGGGCTTCAGTTTGCAATTGGACAAGCACTAGGAGGGCACATGAGAAAGCATAGAGCTAACCTTAATCATGGTTTGCCAATTCATGATCAAGCCCTGCCCATATCTAATGGCACTAAAAGGTTTCATTTGTGCTTGGACTTGGACTTGAACTTGACACCCTACGAGAATGATCTCAACCTCAACTTAATGACACCTGTATTAAATTCCTCTATTTTATTGGAGTAA 501 0.4271 MKRGRDEKGEVDMANCLMLLSKVGESCTNPSRDRVMKGGGFKCKTCNRQFPSFQALGGHRASHKKLKLRGMDLSCKLPRSSMKTKMHSCPICGLQFAIGQALGGHMRKHRANLNHGLPIHDQALPISNGTKRFHLCLDLDLNLTPYENDLNLNLMTPVLNSSILLE* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00829 166 Gene3D Classic Zinc Finger 39 109 - -
Rops3g00829 166 SMART c2h2final6 41 63 IPR013087 -
Rops3g00829 166 SMART c2h2final6 87 109 IPR013087 -
Rops3g00829 166 SUPERFAMILY beta-beta-alpha zinc fingers 41 109 IPR036236 -
Rops3g00829 166 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Rops3g00829 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Rops3g00829 166 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Rops3g00829 166 Pfam C2H2-type zinc finger 41 65 - -
Rops3g00829 166 Pfam C2H2-type zinc finger 87 111 - -
Rops3g00829 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Rops3g00829 166 PANTHER ZINC FINGER PROTEIN ZAT5 7 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00829 Rops-Chr3 10139080 10139580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00829 1 154 C2H2 Transcription Factor Family AT2G28710 47.273 3.57e-33 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops3g00829 zf-C2H2_6 5.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00829 - - gmx:112998408 214.542