Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00825 ATGTCTGCAGCTCTCGATATGACCCTCGACGACATCATTAAGAACAACAAAAAATCTGGATCCGGAAACTCCAGAGGCCGTGCCCGACAATCCGGATCCGGACCCGCTCGCCGCCTCTCCAACCGTTCCGCCAACCGCGCCGCACCCTACGCCACCGCTAAGGCGCCGGAGACGACGTGGCAGCACGATTTGTATGCAAATCCGCATGGGGCTGTGGCGGCGTACCCAGCTCAAGGTGGTGGTCGTGCTCCTTCCATTGAAACTGGGACCAAGCTCTATATATCTAATTTGGATTATGGTGTTTCCAACGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACTTGAAACGGCATACCGTGCATTACGACAGGAGTGGCAGATCAAAGGGTACAGCAGAAGTGGTCTTTTCACGACGAGTTGATGCTGTAGCTGCTGTAAAGAGGTACGACAATGTTCAACTAGATGGGAAACCAATGAAGATAGAGATTGTGGGAACAAACATTTCTACACCTGGTGTGGCTCCTGCTGCAAATGCAGCTATTGGAAGTTCAAATGGAGTTCCTCCAAGTGGACAAGGAAGAGGTGGGGCATTTCGAAGGCCAGGCGGCAGAGGGCGAGGCATGACAAGGGATCGAGGACGTGGAAGAGGTCGTGGTGGAGGTCGCAGTGGAGGTCGTGGTGAAAATGTATCTGCAGATGATCTCGATGCTGATTTGGAGAAGTATCATGCAGAGGCAATGCAATTGAACTGA 756 0.5146 MSAALDMTLDDIIKNNKKSGSGNSRGRARQSGSGPARRLSNRSANRAAPYATAKAPETTWQHDLYANPHGAVAAYPAQGGGRAPSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHTVHYDRSGRSKGTAEVVFSRRVDAVAAVKRYDNVQLDGKPMKIEIVGTNISTPGVAPAANAAIGSSNGVPPSGQGRGGAFRRPGGRGRGMTRDRGRGRGRGGGRSGGRGENVSADDLDADLEKYHAEAMQLN* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00825 251 CDD RRM_THOC4 90 164 - -
Rops3g00825 251 FunFam THO complex subunit 4 83 233 - -
Rops3g00825 251 Gene3D - 78 234 IPR012677 -
Rops3g00825 251 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 249 - -
Rops3g00825 251 MobiDBLite consensus disorder prediction 205 219 - -
Rops3g00825 251 MobiDBLite consensus disorder prediction 14 40 - -
Rops3g00825 251 SMART rrm1_1 91 163 IPR000504 GO:0003723
Rops3g00825 251 SMART FoP_duplication_2 178 251 IPR025715 -
Rops3g00825 251 Coils Coil 233 251 - -
Rops3g00825 251 Pfam C-terminal duplication domain of Friend of PRMT1 194 245 IPR025715 -
Rops3g00825 251 MobiDBLite consensus disorder prediction 180 238 - -
Rops3g00825 251 MobiDBLite consensus disorder prediction 1 55 - -
Rops3g00825 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Rops3g00825 251 SUPERFAMILY RNA-binding domain, RBD 62 165 IPR035979 GO:0003676
Rops3g00825 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 167 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00825 Rops-Chr3 10099740 10103299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00825 89 164 Eukaryotic Initiation Factors Gene Family AT2G23350 34.211 4.21e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00825 K12881 - gmx:100775827 355.91