Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00815 ATGGAGGGTCAGAATGAGGAGGTTGAGATGGGAATGGGAGGGTCTAGTGGGATTCCTGCAAATTCAAGATGGAACCCTACAAAAGAGCAAATAAGCATGTTGGAGGGTCTTTATAAACAAGGAATAAAGACTCCAACTGCTGAGGAAATACAACAGATAACTGCTAGGCTCAGGGCGTATGGTCACATCGAAGGAAAGAATGTTTTCTACTGGTTTCAGAATCACAAAGCTAGGCAGAGACAGAAGCAGAAGCAACAAAGCATTGCTTATTTCAATCGCTTTCTTCATAGGCCTCAACCCATTTTCTCTCCACCAATTTGTCCCACTGCTCTCTGCGGTTCATATTACATCCCTCAGGCACAGAGTGAAATTGGCTTATATCCTCAACAACATCCAAAGGTGCTTCTACCCGCAGGGTTTATGAGGAGCCCAACTGAGACAGTTGTTCCAAACAACATGTCAAGTGTCTGTAATAGCCCGTTGGTATATGAAGGCATGCAAGAGAGAATCTCTGATTGTAACATTGGCTACAGTAACCAAGAAACGTTGGATCTCTTTCCTCTGCACCCAACTGGCATCTTAGAAGGAAAAGCAACAGACCAGGTGTCTTCTTTGGCTTCAGTTTCTGCTGATAGTTCCACTGATACACCTTCTGGCTCTCCTGATATCAATGAAGAAGATGGTTGTCCAGAAAATCAACCCTTCTTTGACTTTTTTAGTTCTGGACAAGGTTCTTAA 738 0.435 MEGQNEEVEMGMGGSSGIPANSRWNPTKEQISMLEGLYKQGIKTPTAEEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQQSIAYFNRFLHRPQPIFSPPICPTALCGSYYIPQAQSEIGLYPQQHPKVLLPAGFMRSPTETVVPNNMSSVCNSPLVYEGMQERISDCNIGYSNQETLDLFPLHPTGILEGKATDQVSSLASVSADSSTDTPSGSPDINEEDGCPENQPFFDFFSSGQGS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00815 245 ProSiteProfiles 'Homeobox' domain profile. 17 82 IPR001356 GO:0003677
Rops3g00815 245 Pfam Homeodomain 21 81 IPR001356 GO:0003677
Rops3g00815 245 MobiDBLite consensus disorder prediction 204 245 - -
Rops3g00815 245 SUPERFAMILY Homeodomain-like 21 90 IPR009057 -
Rops3g00815 245 CDD homeodomain 23 77 IPR001356 GO:0003677
Rops3g00815 245 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 7 214 IPR044555 GO:0003700|GO:0099402
Rops3g00815 245 SMART HOX_1 19 86 IPR001356 GO:0003677
Rops3g00815 245 Gene3D - 23 90 - -
Rops3g00815 245 MobiDBLite consensus disorder prediction 204 221 - -
Rops3g00815 245 MobiDBLite consensus disorder prediction 1 23 - -
Rops3g00815 245 FunFam WUSCHEL-related homeobox 4 21 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00815 Rops-Chr3 9959935 9961297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00815 15 245 Wox Gene Family AT5G59340 43.023 1.12e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Rops3g00815 Homeodomain 1.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00815 - - pvu:PHAVU_011G064900g 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00815 3 9959935 9961297 Rops3g00815 3 9959935 9961297 ECH