Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00812 ATGGTTTTCTCTTCTATTCCAGTGTATGTAGATCCTCCCAATTGGCAGCAGCAACCAAATCATCATCAAGCAAATGGAAGTGATAGCACTCAGCTTCTTCCACCTTTGCCTCCTCAAGTGGGAGGTAGTGGAACTGTTGGTTCAATCAGGCCAGGTTCCATGGCAGATCGAGCTCGTCTTGCTAAGATACCACCTCCTGAACCAGCTCTCAAGTGTCCTCGTTGTGAATCAACCAACACAAAATTTTGCTACTTCAATAACTATAGCCTCTCTCAACCCCGTCACTTTTGCAAGACTTGTAGGCGTTATTGGACAAGAGGGGGTTCTCTAAGAAATGTTCCTGTGGGTGGAGGATGCAGAAGAAACAAGAAGAACAAAAGGAGTCGCTCTAAATCTCCTGCAACTTCTGATAAACACTCACTTTCCACTCCCTCATCAAGTGAAAATATCCCTACCACTCATGAGCTAATTGCTCAGTTGCCACAACCAACTAACCTACCCTTCATGGCTTCTCTTCAGAATCTGAATCGTTATGCTGTTGGAAACATGGGTCTTGGCTTGCGTGAGATTCAAGAACAAACCGATCATATGGGGTTTCAACTTGGTGCTAATAACTCACCTGCTGCAGCTGGAGGAGGAGGAGGAGTGGAACAGTGGCGTTTACAGCAATTTCCTTTCTTGAATTGTTTTGAATCAACTTCAGGTGGTTCATATCCTTTTCAAAGCGAGAATATTGAAGCACCACCGTCTGGTTTGGTTGGAGATATGGCTCCAAGTTCTAGGGTTACTCAGCTGCCACCAATTAAAATGGAAGAAAATGGAGCTCTAAATTTCTCAAGATCTTCTCTTAATGCCTCAGAACATAACCAATACTATTCATGGACTGATATGTCAGGTCTTGCTTCTTCTTCCACTAGTCATCTCTTGTGA 930 0.4387 MVFSSIPVYVDPPNWQQQPNHHQANGSDSTQLLPPLPPQVGGSGTVGSIRPGSMADRARLAKIPPPEPALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGSLRNVPVGGGCRRNKKNKRSRSKSPATSDKHSLSTPSSSENIPTTHELIAQLPQPTNLPFMASLQNLNRYAVGNMGLGLREIQEQTDHMGFQLGANNSPAAAGGGGGVEQWRLQQFPFLNCFESTSGGSYPFQSENIEAPPSGLVGDMAPSSRVTQLPPIKMEENGALNFSRSSLNASEHNQYYSWTDMSGLASSSTSHLL* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00812 309 Pfam Dof domain, zinc finger 69 124 IPR003851 GO:0003677|GO:0006355
Rops3g00812 309 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
Rops3g00812 309 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Rops3g00812 309 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 51 218 IPR045174 GO:0003700|GO:0006355
Rops3g00812 309 MobiDBLite consensus disorder prediction 12 36 - -
Rops3g00812 309 MobiDBLite consensus disorder prediction 12 51 - -
Rops3g00812 309 MobiDBLite consensus disorder prediction 111 150 - -
Rops3g00812 309 MobiDBLite consensus disorder prediction 135 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00812 Rops-Chr3 9934942 9936566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00812 31 308 C2C2-Dof Transcription Factor Family AT3G55370 42.903 1.90e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Rops3g00812 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00812 - - ccaj:109798892 457.218