Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00810 ATGGAGGGTGAGAAAGAAGCGGGGATGGTGATTGACTTGGTGAATGAGATAGCTAGCATCTCTGACTTCAGGCTTATGGTGAAGAAGCAGTACTGTAACTTGGCTCGTAGGTTGAAGCTTTTGATCCCTTTGTTCGAGGAGATTAAGGAGATGAAAGAGACAATCCCTGATGACACTTCGAAAGCCATGCTTGCCTTCAAGGAAGCTCTCGAATCCACCAGGGAACTACTCAGATTCGGAAGTGAAGGCAGCAAAATTTACATGGTCCTTGAGAGGGACCAGATCATGAATAAATTCTATGAGGTGACAGCTCGGTTGGAACATTCGTTGGAGGGAATTTCCTATGACAAGCTTGATATATCAGATGAAGTTAAGGAGCAGGTTGATTTGGTCCTTACCCAGTTCAGAAGAGCCAAAGGGAGGGTTGATGAACCAGATGTCAAGTTGTATGAGGATATGTTGACCCTTTACAACAATAGCAGTGATGCAGCTACAGATCCAGCTGTTCTAAGTCGATTAGCTGAAAAATTGCAATTGATAGGAATCATTGATCTCACACAAGAATCACTAGCTTTGCATGAGATGGTGGCAGCGAGTGGTGGGGATCCAGGGAGACGCATCGAGAAGATGTCAATGTTATTGAAAAAGATAAAGGATTATGTACAAACTGAAAACCTAGTCAAGGATGATAATGTTGAAGGAAAAGACCTTTCTTCAAGAGTTTGCAGATCAGGGGCAAATGAAAAGAATCATCAGGCCCCTGTTATCCCAAAAGATTTTAAATGTCCAATTTCCCTGGAATTGATGAAGGATCCTGTCATTGTTTCAACAGGACAGACTTATGAACGTTCTTGTATTGAGAAGTGGTTGCAAGCTGGGCATATGACATGCCCAAATACACAGCAGACTCTCACCAGTACTGTTCTCACACCCAACTATGTCCTACGAAGCCTCATAGAACAATGGTGTGAAGCCAATGGCATGGAGCCACCAAAACGACCCAGCAGTTCTCAACCTAGTAAATCAGCATCAGCCTGCTCCCCAGCTGAACGAAGTAAGATTGAACATCTTCTCCAAAAGCTCACATCTGGCAGTCCTGAAGACCAGAGATCAGCTGCATGTGAGATTCGCCTTCTTGCAAAACGCAATGCAGATAACCGTGTGGCTATTGCTGAAGCTGGTGCAATACCTCTCCTTGTTGGTCTCCTGTCTGTGCCTGATTCCCGCACTCAAGAGCATGCTGTAACAGCACTTCTGAATCTTTCCATATATGAAAATAACAAAGGAAGCATTGTTTCTTCAGGAGCAGTTCCAGGTATAGTTCATGTGCTCAAGAAGGGAAGCATGGAAGCTCGGGAAAATGCAGCAGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAATAAGGTTACAATTGGTTCTTCAGGAGCCATACCACCACTAGCGACACTTCTGAGTGAGGGTACTCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAGGGTAACAAGGGAAAGGCAGTGAGGGCTGGTGTTATTCCCACATTAATGAGGCTGCTGACAGAACGTAGTGGGGGAATGGTGGATGAAGCATTGGCCATTTTGGCAATATTGTCTAGTCATCCTGAAGGGAAGATTGCTATTGGTGCTGCAGAGGCAGTGCCGGTTTTGGTAGAGTTTATTTGCAATGGATCCCCAAGGAACAAAGAGAATGCAGCAGCAGTTTTAGTGCACCTTTGTTCTGGAGATCACCAATATATAGTACAGGCCCAAGAGCTAGGGGTGATGGGTCCATTGTTGGAATTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCAGCACAATTGATAGAGCGCATGAGCAGGTTCCTTGAACAGCAGCAACAACAGGAAGAGGAGGCTCAAACACAAACTGAACTTCAAGCTCAGAATGAGGATATCCAACCACCTTTGATTACTAACCTCGATGATACCTGA 1998 0.4464 MEGEKEAGMVIDLVNEIASISDFRLMVKKQYCNLARRLKLLIPLFEEIKEMKETIPDDTSKAMLAFKEALESTRELLRFGSEGSKIYMVLERDQIMNKFYEVTARLEHSLEGISYDKLDISDEVKEQVDLVLTQFRRAKGRVDEPDVKLYEDMLTLYNNSSDAATDPAVLSRLAEKLQLIGIIDLTQESLALHEMVAASGGDPGRRIEKMSMLLKKIKDYVQTENLVKDDNVEGKDLSSRVCRSGANEKNHQAPVIPKDFKCPISLELMKDPVIVSTGQTYERSCIEKWLQAGHMTCPNTQQTLTSTVLTPNYVLRSLIEQWCEANGMEPPKRPSSSQPSKSASACSPAERSKIEHLLQKLTSGSPEDQRSAACEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLATLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTERSGGMVDEALAILAILSSHPEGKIAIGAAEAVPVLVEFICNGSPRNKENAAAVLVHLCSGDHQYIVQAQELGVMGPLLELAQNGTDRGKRKAAQLIERMSRFLEQQQQQEEEAQTQTELQAQNEDIQPPLITNLDDT* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00810 665 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
Rops3g00810 665 SMART Ubox_2 259 322 IPR003613 GO:0004842|GO:0016567
Rops3g00810 665 FunFam RING-type E3 ubiquitin transferase 255 329 - -
Rops3g00810 665 Gene3D - 6 116 IPR036537 GO:0007166
Rops3g00810 665 SMART arm_5 506 546 IPR000225 GO:0005515
Rops3g00810 665 SMART arm_5 589 629 IPR000225 GO:0005515
Rops3g00810 665 SMART arm_5 383 423 IPR000225 GO:0005515
Rops3g00810 665 SMART arm_5 547 587 IPR000225 GO:0005515
Rops3g00810 665 SMART arm_5 465 505 IPR000225 GO:0005515
Rops3g00810 665 SMART arm_5 424 464 IPR000225 GO:0005515
Rops3g00810 665 ProSiteProfiles U-box domain profile. 255 329 IPR003613 GO:0004842|GO:0016567
Rops3g00810 665 FunFam RING-type E3 ubiquitin transferase 4 116 - -
Rops3g00810 665 Pfam Neurochondrin 517 635 IPR008709 -
Rops3g00810 665 MobiDBLite consensus disorder prediction 633 665 - -
Rops3g00810 665 MobiDBLite consensus disorder prediction 326 346 - -
Rops3g00810 665 CDD RING-Ubox_PUB 257 309 IPR045210 -
Rops3g00810 665 MobiDBLite consensus disorder prediction 331 346 - -
Rops3g00810 665 FunFam RING-type E3 ubiquitin transferase 530 650 - -
Rops3g00810 665 PANTHER U BOX DOMAIN-CONTAINING 26 632 - -
Rops3g00810 665 Gene3D - 338 662 IPR011989 -
Rops3g00810 665 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Rops3g00810 665 FunFam RING-type E3 ubiquitin transferase 339 490 - -
Rops3g00810 665 SUPERFAMILY ARM repeat 354 635 IPR016024 -
Rops3g00810 665 Pfam Armadillo/beta-catenin-like repeat 466 504 IPR000225 GO:0005515
Rops3g00810 665 Pfam Armadillo/beta-catenin-like repeat 383 422 IPR000225 GO:0005515
Rops3g00810 665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 329 IPR013083 -
Rops3g00810 665 CDD MLKL_NTD 8 136 - -
Rops3g00810 665 SUPERFAMILY RING/U-box 251 332 - -
Rops3g00810 665 Coils Coil 620 653 - -
Rops3g00810 665 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 436 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00810 Rops-Chr3 9922246 9927054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00810 1 642 U-box Gene Family AT3G46510 69.585 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00810 - - gmx:100812160 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00810 3 9922246 9927054 Rops3g00810 3 9922246 9927054 ECH