Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00806 ATGATGGAGACACCCTTCATGGCTTCTAACCTCACCACCATGGAAGAAGAATGTGATGAGAAGGTTCATGTAGCAGTTGGGAAGTCGGTGAAGAAAGCCACGACTTTGCTTCAATGGAGTTTCAGCCACTTTAGGGAAAAACATATTCACTTGCTTCATGTTTACCAACCTTCTACTATGATCCCCACACTGTTGGGAAAATTGCCAGCATCTCAAGCTAATCCGGAAGTAGTATCTACTTTTAGAATAGAGGAAAGAGAACAGACCATGAGGCTTTTGGAGAAGTACTTGAACATTTGCCGTGCAGCTAAGGTTAAGGCAAGCAGTGTCATAGTTGAAGCTGATCAAGTCCAGCAAGGGATTGTTGATTTGGTTATTAGGCATAATATCAGGAAGCTTGTTATTGGAGCAATACCAGAAAATTGCATGAAAGTCAAAAGGAATTCCAGTAAAGCAAATTATGCTGCCAAAAATGCTCCCCCATTCTGTGAAATATGGTTTATTTATAAAGAAAGCTTGAGTTGTAGATCTTTTCAATATGGTTTGAATGAATTATTCCATTCAGAATATCTTCAATCAAATTCTACAAGGACTACAATAAGTACTGGAGTTCCAAGCGAAATCATTGAAACAGAAACCATTTCTTCATCCAAATCATCCTGTTGTAATAGCCATAGTTCTCCCCAAAATTCTGCTGGGGGATATTTAGATACTCATTCAGAGGTTGAGGAAGAAACAGTTAATAGACAACTTATTGAAGCCAAAAGAGAAGCAGATGCAGCAACAGATGAGGCCTTTGCAGAGCTGTTGAAGTGTAAAAGGTTGGAAGTCAAAGCCATTGAGGCCATAAATAAGGTCAACTTGTTTGAATCTGCCCATTCACATGAAGTAAAGCTCAGAAAAGAGGCTGAGAATGCACTGAGAGCTACAATACAGGAGCAACACAAGTTATTGGATGAGAAAGAAGAAATTGCTAGTGAGCTACAAAGGACCATGAGAAGTATTTCCATTCTAGACAGTTGTGCACAGGAAACCAACCATAGGCGAAATGAAGCTACAAATGAACTATCACTAATTCAAGCATCCATCTCAAACATGTGGCATGAAAAGCTGCAGATCAGGCGACAGAAAATGGAAGCCTTACACTGGCTCGAGCGGTGGAAAAGTCGCGGACAAGTTGGAACAGCTCACTACAATGGGGTCATTGGGTTTGCTGAAGCATTCCCTGATCTAGCAGAATTTTCATTATCAGATCTTCAAAATGCAACATGCAATTTTTCTGAGAGCTTCAAAATTAAGCAGGGTGGATATGGTTCTATTTATAAGGGGGAAATGTTGGGTAGAACTGTTGCTATAAGGAAGCTCCATCCACATAAGATGCAAGGACCAGCAGAGTTTCATCAAGAGGTTCAAGTTCTCGGTAGTCTCCAGCACCCCCATCTGGTGACTTTGCTCGGTTTTTGCCCTGAATCCTGGTCACTTGTGTATGAGTACTTGCCTAATGGAAGTCTCCAAGACTACCTATTCCAGAAAAGCAGTCTCCCCCCTTTGACATGGAATATCCGAGCACGATGGATTGCTGAAATTGCTAAAGTTCTCTGCTTCTTACATTCTACCAAACCTGAAACTATTGTCCATGGTGATCTGAAGCTTGAAATTGTCCTCCTTGATTCTTCACTTAGTTGCAAGATATGTGAATTTGGGTTCAGCAGGCTGGTGACAGAGGGGTCACTCTATCTACCTAGTTTCCGCTTCAGTACTGAGCCAAAGGGTTCTTTTACATATACTGATCCAGAGTTTCAGAGAACAGGAGTCCTAACACCTAAGTCTGACATATACTCTTTTGGGCTCATCATTTTGCAACTCCTCACTGGTAGGACTCTAGTTGGATTAGTAGACGAAGTACGCAGAGCAGTTTCATGTGGAAATTTGTCTTCAATTTTGGACTGTTCAGCTGGAGAATGGCATTCTGATGTAGCAGCACGACTGGTTGAACTAGGATTGCAATGCTGCCGACAAAATAGTAGAGACAGACCAGAGTTAACACCTTCTCTGGTGAGAGAATTGGAGCAGTTGCATGTTTCAGAAGAGCTACCTGCACCATCTTTTTTCTTGTGTCCAATCTTTAAGGAAATAATGTACGATCCTCAAGTTGCAGCAGATGGATTTACTTATGAAGGGAAGGCCATAAGTGAATGGTTGGAAAATGGGCACGAAACTTCTCCAATGACTAATTTAAAATTGAGTCACCTGCATCTTACTCCCAATCATGCACTCCGACTTGCTATCCAAGGCTGGCTTTGCAAATCTTGA 2313 0.4155 MMETPFMASNLTTMEEECDEKVHVAVGKSVKKATTLLQWSFSHFREKHIHLLHVYQPSTMIPTLLGKLPASQANPEVVSTFRIEEREQTMRLLEKYLNICRAAKVKASSVIVEADQVQQGIVDLVIRHNIRKLVIGAIPENCMKVKRNSSKANYAAKNAPPFCEIWFIYKESLSCRSFQYGLNELFHSEYLQSNSTRTTISTGVPSEIIETETISSSKSSCCNSHSSPQNSAGGYLDTHSEVEEETVNRQLIEAKREADAATDEAFAELLKCKRLEVKAIEAINKVNLFESAHSHEVKLRKEAENALRATIQEQHKLLDEKEEIASELQRTMRSISILDSCAQETNHRRNEATNELSLIQASISNMWHEKLQIRRQKMEALHWLERWKSRGQVGTAHYNGVIGFAEAFPDLAEFSLSDLQNATCNFSESFKIKQGGYGSIYKGEMLGRTVAIRKLHPHKMQGPAEFHQEVQVLGSLQHPHLVTLLGFCPESWSLVYEYLPNGSLQDYLFQKSSLPPLTWNIRARWIAEIAKVLCFLHSTKPETIVHGDLKLEIVLLDSSLSCKICEFGFSRLVTEGSLYLPSFRFSTEPKGSFTYTDPEFQRTGVLTPKSDIYSFGLIILQLLTGRTLVGLVDEVRRAVSCGNLSSILDCSAGEWHSDVAARLVELGLQCCRQNSRDRPELTPSLVRELEQLHVSEELPAPSFFLCPIFKEIMYDPQVAADGFTYEGKAISEWLENGHETSPMTNLKLSHLHLTPNHALRLAIQGWLCKS* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00806 770 Pfam U-box domain 700 769 IPR003613 GO:0004842|GO:0016567
Rops3g00806 770 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 700 770 IPR013083 -
Rops3g00806 770 Coils Coil 300 331 - -
Rops3g00806 770 Gene3D Phosphorylase Kinase; domain 1 404 498 - -
Rops3g00806 770 Gene3D Transferase(Phosphotransferase) domain 1 499 699 - -
Rops3g00806 770 PANTHER OS02G0152300 PROTEIN 22 764 - -
Rops3g00806 770 SMART Ubox_2 703 766 IPR003613 GO:0004842|GO:0016567
Rops3g00806 770 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 35 142 - -
Rops3g00806 770 CDD RING-Ubox_WDSUB1-like 701 756 - -
Rops3g00806 770 ProSiteProfiles Protein kinase domain profile. 426 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00806 770 ProSiteProfiles U-box domain profile. 699 770 IPR003613 GO:0004842|GO:0016567
Rops3g00806 770 Pfam Protein tyrosine and serine/threonine kinase 431 682 IPR001245 GO:0004672|GO:0006468
Rops3g00806 770 SUPERFAMILY RING/U-box 697 769 - -
Rops3g00806 770 CDD STK_N 21 170 - -
Rops3g00806 770 Gene3D HUPs 10 144 IPR014729 -
Rops3g00806 770 Coils Coil 244 264 - -
Rops3g00806 770 SUPERFAMILY Protein kinase-like (PK-like) 410 683 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00806 Rops-Chr3 9813859 9819431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00806 19 767 U-box Gene Family AT2G45910 36.330 3.79e-165 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Rops3g00806 PK_Tyr_Ser-Thr 4.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00806 - - gmx:100799032 1189.48