Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00800 ATGGTTTCAGGACACCAAGCATCTTATGCAAATAAATTCTCCTTGATTTCCATTATACATCACCAATATAGAATTAGGAGCCAGGATACAGAAGAAGACAAACAGAGTTCATTGCTAACAGGCAACAAGTTTCAAGGAATTAGTATTGCTTCTGCCATGGGAGTTTGTTTGTGCCTCCAAATTAAAGCTGAGAGCCCATGTAACACTGGGTTAAGTTCAAAGTATGTGAGTGCTGATGCCAAAGATCTCAATAGCCCAAGTAGTAATAAGGTCCCAAGTAGTAAGGTCACAGCAGGGTTGGTGCCTCAGACTCCCCAGAGTGAGGGTGAGATCTTGAAATCATCCAATCTGAAGAGCTTTACTTTGACAGAACTTAAGGCTGCCACCAGAAATTTCCGTGCAGATAGTGCGTTAGGAGAAGGTGGTTTTGGATCAGCTTTTAAGGGTTGGATTGATGAGCACTCACTGTCTGCTGCCAAACCTGGCACAGGCATTGTTGTTGCTGTGAAAAGACTTAATCAGGGTGGCTTCCAAGGTCACAAGGAGTTGTTGGCAAGGCATGGTATGAATCAAGAAGCAAGTCTAGAGGCTCAAATCAACTATCTAGGCCAGCTTTCTCATCCTCATCTGGTGAAATTGATTGGTTATTGCCATGAAGATGAAAACCACCTTCTGGTATATGAATTTATGCCTCGTGGCAGCTTGGAGAATCACTTGTTCATGAGAGGCTCATATTTTCAACCTCTTTCTTGGAGCCTCCGTTTGAAGGTAGCTCTTGGTGCTGCCAAAGGGCTTGCATTTCTTCACAGTGCTGAAACAAAAATGATATACCGGGATTTCAAGACTTCAAATGTGTTGCTGGATTCAAATTATAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGAGGGGCTAACAGGTGATAAAAATAATGTCTCCACCAGGGTAATGGGAACCTATGGATATGCAGCTCCAGAATATTTAGCCACTGGTAATCTCACTGCAAAGAGTGTAGTCTTCAGTTTTGGAGTTGTCCTACTTGAAATATTATCAGGCAGAAGAGCTATTGACAAGAATCAACAACCTTCAGGACAACACAATTTGGTGGAATGGGCCAAGCCTTACCTAGCCAACAAACGTAAGATTTTGCGTGTGTTGGATAACCGTCTTGAAGGCCAATATGAATTAGATGAGGCCTTTAAGGTAGCTACCCTCATCCTAAGATGCCTTTCAACAGAACCCAAGTTGAGACCAAACATGGATGAGGTTGTCACATATTTGGAACAGCTACAGGTTCCACATGTAAATGAAGGCAATAAAAAACGTTCACGTAGAAAAAGTGCTGATGATGTTACTCATGGTAGGGACCCCATAGCTTATCCCCGCGCCTCTTCTTCCTCGCTCAGTATATGA 1413 0.4282 MVSGHQASYANKFSLISIIHHQYRIRSQDTEEDKQSSLLTGNKFQGISIASAMGVCLCLQIKAESPCNTGLSSKYVSADAKDLNSPSSNKVPSSKVTAGLVPQTPQSEGEILKSSNLKSFTLTELKAATRNFRADSALGEGGFGSAFKGWIDEHSLSAAKPGTGIVVAVKRLNQGGFQGHKELLARHGMNQEASLEAQINYLGQLSHPHLVKLIGYCHEDENHLLVYEFMPRGSLENHLFMRGSYFQPLSWSLRLKVALGAAKGLAFLHSAETKMIYRDFKTSNVLLDSNYNAKLSDFGLAKEGLTGDKNNVSTRVMGTYGYAAPEYLATGNLTAKSVVFSFGVVLLEILSGRRAIDKNQQPSGQHNLVEWAKPYLANKRKILRVLDNRLEGQYELDEAFKVATLILRCLSTEPKLRPNMDEVVTYLEQLQVPHVNEGNKKRSRRKSADDVTHGRDPIAYPRASSSSLSI* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00800 470 Pfam Protein tyrosine and serine/threonine kinase 135 426 IPR001245 GO:0004672|GO:0006468
Rops3g00800 470 MobiDBLite consensus disorder prediction 435 470 - -
Rops3g00800 470 Gene3D Transferase(Phosphotransferase) domain 1 230 454 - -
Rops3g00800 470 MobiDBLite consensus disorder prediction 435 456 - -
Rops3g00800 470 SUPERFAMILY Protein kinase-like (PK-like) 110 431 IPR011009 -
Rops3g00800 470 FunFam Serine/threonine-protein kinase BIK1 101 229 - -
Rops3g00800 470 ProSiteProfiles Protein kinase domain profile. 132 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00800 470 PANTHER OS01G0588500 PROTEIN-RELATED 85 431 - -
Rops3g00800 470 Gene3D Phosphorylase Kinase; domain 1 103 229 - -
Rops3g00800 470 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 230 442 - -
Rops3g00800 470 ProSitePatterns Protein kinases ATP-binding region signature. 138 170 IPR017441 GO:0005524
Rops3g00800 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00800 Rops-Chr3 9757633 9761761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00800 110 437 Glycoside Hydrolase AT3G07070 45.000 3.39e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops3g00800 PK_Tyr_Ser-Thr 4.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00800 - - vun:114169806 592.038