Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00799 ATGAAGTGCTTCCATTTCTCAAACGGTGAGAGGCGAGGAGGTGAAGAAGAAGAAGGTGTGGCATCAAGCTCAAGGGGTTCAAGGGTATCATGGGCACGCTCACTGAGTCTTATGGACACACGCAGGTCCGAGTTTGACTCGGAGTTCTCCGATACGGTGGGGTTTCATGAGTTTCTCTCTCAACGCCGTGCCAACAACCTTCGACTCTTCTCTTTCTCCGACCTTAAATCCGCCACACGTGGCTTCCACAGAACCCTCTTGATCGGCGAAGGAGGCTTTGGTTCTGTCTACAAAGGGGTTCTCAATTCTCATTCTCGTTCACAAATTGAAGTTGCTATCAAGCAGTTGAATCGTAATGGCCACCAGGGGCATAAGGAGTGGATTAATGAAGTGAATTTATTGGGTGTGATCAAGCATCCGAATCTCGTGAGGTTAGTGGGTTACTGTGCTGAAGATGATGAAAGAGGGATTCAAAGACTTTTGGTGTATGAGTTTATGCCTAATAAGAGCTTGGAAGACCATCTTTTGGCTCGTGTCTCGTCAACACCTCTCCCATGGACGACAAGATTGAAAATTGCTCAAGATGCAGCTCGTGGTTTGGCATACCTGCATGAAGAAATGGATTTTCAGCTAATATTTCGAGATTTTAAGACATCCAACATCTTGCTGGATGAGGACTTCAATGCCAAGCTTTCTGATTTTGGACTTGCTAGGCAAGGACCCTCAGAAGGATCTGGCTATGTTTCAACAGCAGTTGTTGGCACCATAGGTTATGCTGCACCAGAGTATGTTCACACTGGTAAGCTGACTGCCAAGAGTGATGTTTGGAGCTTTGGTGTAGTTCTTTATGAACTCATCACTGGGAGGAGATCCGTTGAAAGAAACCTACCAAGAAATGAACAAAAGCTTTTGGAGTGGATAAGACCTTATGTTTCTGATCCTAGGAAGTTCCATCATATTGTAGACACCAGACTTGAAGGACAATATTGCATCAAGTCAGCTCATAAACTTGCAATCCTAGCAAACAAGTGTCTCATGAAGCAGCCAAAGTCACGTCCAAAAATGAGTGAGGTTGTTGAGATTCTTGGAAACATTATTAATGAGACAGTTCCTCAGGATGAATGCATCTCCCAAGGTGTTGTGGCAACTGAAGAAGAAAAAGAAATAAAGTTATCTGTAGAGGACACTGAACCTGAACCAGCTAAACAAGGGAATAATTATCTGAAGAAGGTTTTTGAATTAAGAGACATGGTCAGCTTAAGAAATAAGTCTATTGGAAGGTTGGATTGGAAATATTGGGCACCTGGGCTGGGTGAAGAAGTAGAAAAGTGGTCCGGTGGACCACTCAATTTTTTCAAACGAAAATACGTTTTTGCCCCTCCCATTTTCTCCATTTGCCCCTCTTACCTTTTAATCCACCACCACCGCCTCCTCCCTCCCACCTTTTCATCCACCTCCTCCACCTTCATCTCTGGCCTCCACCACCTCTCTGGCCTCAGCACCTCTACAGATTCGTCACCTTGTGATTTTCAATGGCCTTCAAAAACACCTCGAACTCAAAACCCCCCATCGACACCACCGTGCTCCCTCGTCGGAGCTGCGACTAGACTCCGTTGCTAG 1620 0.4537 MKCFHFSNGERRGGEEEEGVASSSRGSRVSWARSLSLMDTRRSEFDSEFSDTVGFHEFLSQRRANNLRLFSFSDLKSATRGFHRTLLIGEGGFGSVYKGVLNSHSRSQIEVAIKQLNRNGHQGHKEWINEVNLLGVIKHPNLVRLVGYCAEDDERGIQRLLVYEFMPNKSLEDHLLARVSSTPLPWTTRLKIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDEDFNAKLSDFGLARQGPSEGSGYVSTAVVGTIGYAAPEYVHTGKLTAKSDVWSFGVVLYELITGRRSVERNLPRNEQKLLEWIRPYVSDPRKFHHIVDTRLEGQYCIKSAHKLAILANKCLMKQPKSRPKMSEVVEILGNIINETVPQDECISQGVVATEEEKEIKLSVEDTEPEPAKQGNNYLKKVFELRDMVSLRNKSIGRLDWKYWAPGLGEEVEKWSGGPLNFFKRKYVFAPPIFSICPSYLLIHHHRLLPPTFSSTSSTFISGLHHLSGLSTSTDSSPCDFQWPSKTPRTQNPPSTPPCSLVGAATRLRC* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00799 539 FunFam Serine/threonine-protein kinase BIK1 52 165 - -
Rops3g00799 539 Pfam Protein tyrosine and serine/threonine kinase 87 362 IPR001245 GO:0004672|GO:0006468
Rops3g00799 539 MobiDBLite consensus disorder prediction 1 23 - -
Rops3g00799 539 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 166 375 - -
Rops3g00799 539 SUPERFAMILY Protein kinase-like (PK-like) 63 362 IPR011009 -
Rops3g00799 539 MobiDBLite consensus disorder prediction 503 518 - -
Rops3g00799 539 ProSitePatterns Protein kinases ATP-binding region signature. 88 114 IPR017441 GO:0005524
Rops3g00799 539 ProSiteProfiles Protein kinase domain profile. 82 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00799 539 MobiDBLite consensus disorder prediction 1 22 - -
Rops3g00799 539 CDD STKc_IRAK 88 365 - -
Rops3g00799 539 Gene3D Phosphorylase Kinase; domain 1 62 165 - -
Rops3g00799 539 PANTHER OS01G0588500 PROTEIN-RELATED 49 364 - -
Rops3g00799 539 MobiDBLite consensus disorder prediction 503 527 - -
Rops3g00799 539 Gene3D Transferase(Phosphotransferase) domain 1 166 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00799 Rops-Chr3 9746051 9749441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00799 65 363 Glycoside Hydrolase AT3G07070 50.993 7.34e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops3g00799 PK_Tyr_Ser-Thr 6.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00799 - - gmx:100811825 719.539