Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00798 ATGGCTTTGAGGGCCAGTGTGCTCTGCATTGTGTTCATTACCTCCTCAATGTTGATGGTTGAAGCTAGAATTCCAGGGGTTTACAGTGGAGGTTCATGGGAAAGTGCTCATGCTACCTTCTATGGAGGATCTGATGCTTCCGGAACCATGGGTTTGGTGCCATGCAGAAAGCCCGGAGGGATAAGGTTCACAATCAACGGTTTCCGTTACTTCAACCTGGTGCTCATTAGCAACGTAGCGGGTGCAGGTGATATCGTGCGCACGTACGTAAAGGGCACCCGAACCGGGTGGATACCACTGAGCCGAAACTGGGGTCAGAACTGGCAGTCAAACGCGGTTTTGGTGGGTCAGGCCTTGTCCTTCCGAGTCACGGGCAGTGACCGTCGCACCTCCACCTCTTGGAACATTGCTCCACCCAATTGGCAATTCGGTCAAACTTTCACTGGCAAAAATTTCCGGGTCTGA 465 0.5247 MALRASVLCIVFITSSMLMVEARIPGVYSGGSWESAHATFYGGSDASGTMGLVPCRKPGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGTRTGWIPLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIAPPNWQFGQTFTGKNFRV* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00798 154 Gene3D - 60 152 IPR036749 -
Rops3g00798 154 PRINTS Expansin/Lol pI family signature 135 149 IPR007118 GO:0005576
Rops3g00798 154 PRINTS Expansin/Lol pI family signature 97 111 IPR007118 GO:0005576
Rops3g00798 154 PRINTS Expansin/Lol pI family signature 43 59 IPR007118 GO:0005576
Rops3g00798 154 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 70 149 IPR007117 -
Rops3g00798 154 FunFam Expansin 60 152 - -
Rops3g00798 154 Pfam Expansin C-terminal domain 61 138 IPR007117 -
Rops3g00798 154 SUPERFAMILY PHL pollen allergen 57 149 IPR036749 -
Rops3g00798 154 PRINTS Expansin signature 71 92 IPR002963 GO:0009664
Rops3g00798 154 PRINTS Expansin signature 135 151 IPR002963 GO:0009664
Rops3g00798 154 PRINTS Expansin signature 106 127 IPR002963 GO:0009664
Rops3g00798 154 PRINTS Expansin signature 59 71 IPR002963 GO:0009664
Rops3g00798 154 PANTHER EXPANSIN-A15 11 51 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00798 Rops-Chr3 9730883 9733025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00798 1 51 Expansin Gene Family AT2G39700 60.784 9.05e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00798 - - gmx:100811296 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00780 7 10533134 10534721 Rops3g00798 3 9730883 9733025 PCT