Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00789 ATGGATCCTAACTTTACTGCAGCTAGTGATTTCATAAACTGCTTCGAGTTTGATGAAGATGGTCCCATACTAGTCTCTGAGGATCCAAATCAACAACAAGCAACAAACTGGGATGTTCACCAACAATATGGGAGGAGCTTTGTTGATGTTGACCCACCCGTTGAGGGTCAAGGTGCATCTGTGGCAACCATGTCCATGACCTCTGTGATGCATCATCCTTCTCTGCAAGACACTGACTTCTCAGAAACATTCAAGTTCATAAGCCAAGTCCTGATAGAAGAGAACATTGAACAGAGGCCATTTTGTGACTCCCACTCCCTGAGCTTGCAAGTCACCGAGAAATCATTCCATGATGCTCTCATACACAAGTTACCTAATTCCTCCAATACACAACCGTTAGATATTAACGGAACCAACAATCTTTTACATGACAATAATTCTCCGTGTACCACAGTTTCTGTTCTTGGTGATCATGACTTTCACCACAACTCCCATGCCATTTCTCACACACCCTTTCAACCTCCTTCCACTGGTGTTCGTGATGGTGTATTAGATGTGGAATCCTCAGTTAAGAAACTGTTGGAACAAAATATTTTCACCGATACATACTTTATCTCCCAATTTAAGAGAGGGTTAGAGGAAGTTAGCAACTTTCTTCCTCCTGGACCTCGGCTTGTGGCTGATCTAGAGTCAAAGGAAGAAGCAACCATTGTGGTTGGGGAGAATCCATCTGGGTTGAAGTGTAGGAAGAATCATCAGCGTGAAGAAAGTGATACCCCTGAAGAAGGGAAAAATAACAAGCAATCAGCAGTTGGTGTTGTTGATGAGGTTGACTTATCTGATTTGTTTGATCGACTAATGCCTAGTGTGGAAAGTGAGCCAGGTGAAAAGCAACCTTCATCTGATGGAGGAAAGGCTCGTCCTAAGAAACAAGGCAGGAAGAAGGAAACTGTTGATTTGAGTACCCTTCTGCTTCTATGTTCACAAGCTTTGCATGCCAATGACAACAGGACTGCTAATGAGTTACTAAAGCAGATTAGGCAACATTCTTCTCCCTTTGGGGATGCATCGCAGAGGTTGGCTCATTACTTTGCCAATGGCCTCGATGCACGCTTGGTTGGTGATGGCGCCGGTGCACAATTATTTTATTCCTCTCCAAACTCCAAGAGGATCATTACTCCTGAGATTTTGAAAGGTTACCAAGTTTTTCTATCTACTTGCCCATTTAAGAAGTTTCAATTTTTCTTTGCAAATAAAATGATTGTGAAAGCAGCTGAAAAGGCAGAAACCCTTCATATTATCGATTTTGGTATCCACTATGGTTTCCAATGGCCATTACTTATTAAGCTTTTATCAAATAGAGATGGTGGACCTCCCAATCTGAGGATCACAGGGATAGAGTTTCCTGAAGCTGGCTTTCGTCCAACAGAAAGAATTGAGGAAACTGGTCAACGTTTGGCTAACTATTGCAAGCGTTTCAATGTTCCCTTTCAGTACAATGCAATAGCATCACGGAACTGGGAAACTATTAGAGTTGAAGACCTTAAAATTAAGAGCAACGAGCTAGTTGCTGTGAACTGTCTGATGAGGTTTAGGAACTTACTGGATGAGACTATTCAAGTGAACAGTCCTAGAAATGCAGTTCTTCATTTGATCAGGAAGATAGATCCCAATATTTTTACTCAGTCCATTCTTAATGGATCTTATAATTCCCCTTTCTTTGTCCCACGGTTTAGGGAGGCTCTATACAATTTTTCTGCTTTTTATGATATGTGTGACTTTGTCATGCCCCGGGAAAACCAGTGGAGGATGGCGATTGAGAGAGAAATATTGGGTCGGGAGGCAATGAATGTTATAGCATGTGAAGGTTTGGAGAGGGTTGAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGAATACGAGGGTTGGTTTCAAGCAGCTCCCACTGAACCAGGAATTAATGGCCCAATTTAGGACTGAGTTAAGGGAAGGGTACCACAGAGATTTTGTCTTTGATGAAGACAATAACTGGATGCTGCAAGGTTGGAAGGGCCGCATTTTGTTTGCTTCCACTTGTTGGGTGCTGGCATAG 2094 0.426 MDPNFTAASDFINCFEFDEDGPILVSEDPNQQQATNWDVHQQYGRSFVDVDPPVEGQGASVATMSMTSVMHHPSLQDTDFSETFKFISQVLIEENIEQRPFCDSHSLSLQVTEKSFHDALIHKLPNSSNTQPLDINGTNNLLHDNNSPCTTVSVLGDHDFHHNSHAISHTPFQPPSTGVRDGVLDVESSVKKLLEQNIFTDTYFISQFKRGLEEVSNFLPPGPRLVADLESKEEATIVVGENPSGLKCRKNHQREESDTPEEGKNNKQSAVGVVDEVDLSDLFDRLMPSVESEPGEKQPSSDGGKARPKKQGRKKETVDLSTLLLLCSQALHANDNRTANELLKQIRQHSSPFGDASQRLAHYFANGLDARLVGDGAGAQLFYSSPNSKRIITPEILKGYQVFLSTCPFKKFQFFFANKMIVKAAEKAETLHIIDFGIHYGFQWPLLIKLLSNRDGGPPNLRITGIEFPEAGFRPTERIEETGQRLANYCKRFNVPFQYNAIASRNWETIRVEDLKIKSNELVAVNCLMRFRNLLDETIQVNSPRNAVLHLIRKIDPNIFTQSILNGSYNSPFFVPRFREALYNFSAFYDMCDFVMPRENQWRMAIEREILGREAMNVIACEGLERVERPETYKQWQVRNTRVGFKQLPLNQELMAQFRTELREGYHRDFVFDEDNNWMLQGWKGRILFASTCWVLA* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00789 697 MobiDBLite consensus disorder prediction 298 315 - -
Rops3g00789 697 MobiDBLite consensus disorder prediction 236 271 - -
Rops3g00789 697 MobiDBLite consensus disorder prediction 290 315 - -
Rops3g00789 697 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 260 689 IPR005202 -
Rops3g00789 697 ProSiteProfiles GRAS family profile. 311 695 IPR005202 -
Rops3g00789 697 MobiDBLite consensus disorder prediction 247 263 - -
Rops3g00789 697 Pfam GRAS domain family 321 694 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00789 Rops-Chr3 9649739 9651832 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00789 83 695 GRAS Transcription Factor Family AT1G07530 45.415 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops3g00789 GRAS 3.4e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00789 - - tpra:123918580 805.053