Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops3g00787 | ATGAGTCCCCCTATTAGGAAACAAGGACATGATAAGGCCCTTCAAGCTGCCCTTTCAACAGGAGTTTTGCAGCTGGTAGGAAGTGATCACTGTGTCTTTAATTCCACCCAGAAAGCTCTTGGAATTGATGACTTCCGAAAAATTCCTAATGGTGTCAATGGTATTGAAGAAAGGATGCATGTGGTATGGGATACCATGGTGGAATCTGGCCAAATATCTGTCACTGACTATGTTCGGTTGACAAGTGCTGAATGTGCTAGAATTTTCAATATATATCCAAGGAAAGGAGCTATTCTTCCAGGATCTGATGCTGATATTATCATCCTCAATCCAAATTCAAGCTTTGAGATAAGTGCAAAGTCCCACCACTCCAGACTGGACACAAATGTTGATTTGGTTACCATGTTGGAGAAAGCAACTAGTTATGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCTCCTGACATTTCTCAAACATTGTCTCCTCTCTATAAATATCGCCCCCCTCTGTCATTATTTCTGCGCTCTCTCCGTTTCTCTAGGTGTTATATTTCCGGATCAAGATGCTCCTTGGAGACCGACGTCGCCGTCGCCGTTGATCTCCTCCGCCTCCTCGCTCCTTCAAAGCTCAACGATCACCAAATAGATTCTCTTCCATTTGCACAAACAAGTCCTTCTCTCTCTCTCCATGTCTCTCTCAAATGA | 744 | 0.4382 | MSPPIRKQGHDKALQAALSTGVLQLVGSDHCVFNSTQKALGIDDFRKIPNGVNGIEERMHVVWDTMVESGQISVTDYVRLTSAECARIFNIYPRKGAILPGSDADIIILNPNSSFEISAKSHHSRLDTNVDLVTMLEKATSYVKFLQLQVKVLAADEFWPVQGGKAPDISQTLSPLYKYRPPLSLFLRSLRFSRCYISGSRCSLETDVAVAVDLLRLLAPSKLNDHQIDSLPFAQTSPSLSLHVSLK* | 248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops3g00787 | 247 | Pfam | Amidohydrolase family | 13 | 116 | IPR006680 | GO:0016787 | |
| Rops3g00787 | 247 | Gene3D | - | 1 | 130 | - | - | |
| Rops3g00787 | 247 | SUPERFAMILY | Metallo-dependent hydrolases | 1 | 96 | IPR032466 | - | |
| Rops3g00787 | 247 | FunFam | Dihydropyrimidinase-related protein 1 | 1 | 132 | - | - | |
| Rops3g00787 | 247 | PANTHER | HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER | 1 | 132 | - | - | |
| Rops3g00787 | 247 | SUPERFAMILY | Composite domain of metallo-dependent hydrolases | 93 | 130 | IPR011059 | GO:0016810 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops3g00787 | Rops-Chr3 | 9635598 | 9645444 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops3g00787 | 128 | 171 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT5G37800 | 88.636 | 3.42e-20 | 85.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops3g00787 | K01464 | - | gmx:100797867 | 250.366 |