Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00783 ATGCTTTCTACGGATTCCCTTCTTGAAAATTTTCCTGGTTCCGGGAATGGATTTATATTTGAAAACGGTCCGATCTTGGTATGTACAAACCAGAACCAAGGAAGTGGGTTCAAGTTGGAAGATTCATCATCCCCTTCAAACAATTCAGAATCTGCCGGTAATTCTGGTCCTTCTTCTGGAACAAGTTGTAGTAAGCATTCGAATCCTATTCTCAGATACATAAGTGACATCCTCATGGATGAAGAAGATGACTTGGAGCGCAAACCCTGCATGTTGCAGGATTGTTTGAGGCTCCAAGCTGCTGAAAAATCATTCTATGATGTTCTGGGTAGTAGCTACCCTTCATCACAAGGCCAATTCCATGGTTGTTTCCGTGATGATAACACTGACCCAGATGATAATTTTGGTGGAGGAACTGCTACTAGTTCTGAGAGCTACAGTAGTTCCACCACTGATAATTCATATGAATCTGATTGGGTTAATAGTGCTGGTGATTTTGAATCTTCTTTATTGCAAAGATCTCTAGGTGATTCCCCAGAAAACACCTATGAGGTTCTGGATGGAGTACCTCCTGATCCATTTAGAGAAACACAAGCTGGTGTCTATTTTTCAAATGGATCTTGGAATATTATCCAATCTCAGACCAAACCACAGATGAATGAAGAGGGTGTGATGAAAAAAGGTTCCACAGCAGCGAGAGGATCAAGGGAAAAGAGAGGTCATTTTATGAATGAAGAAGAGGAGAGAAGTAGCAAGCTTTCAGCTGTCTATTCTGATGATTCAGAACCATCAGAAATGTTTGATGAGGTACTGCTTTGTAAGGATGGTAAAAGTCCAGCAATTTTTTGTGCAAATCAGGAACCATCTCAGATTGCTGACTCAAGAGGATCCAATGGAAAGACAACACGTTCAAAGAAAGGTTCCAACAAGGGGACAAGTCCAAGTACAACAGTAGATTTATGGACTCTATTAACTCAATGTGCACAAGCTGTGGCTAGCTATGACCAAAGGAATGCAAATGAAATACTCAAGCAAATTAGGCAACACTCTGCACCTCTTGGCGATGGACTCCAGCGTTTGGCTCATTACTTTGCCATTGGCCTAGAGGCACGATTAGCTGCTGGAACACCAAAGTATAAACTCCTTCAATCTTCATCTGCTGCGGATATGTTAAAAGCTTACAAAGTATACATCACAGCATCTCCATTTCCAAGGATGTCAAATTTCTTGGCTAACAGAACTATTCTGAAGCTAGTACAAAATGAAGGCAGTCTTCACATTATTGACTTTGGGATTTTCTATGGTTTCCAATGGCCTTGCCTCATCCAACGTCTTTCAGAGAGACCAGGTGGGCCTCCAAGGCTTCGAATTACAGGAATTGATTTTCCACAACCAGGATTTAGGCCTGCAGAAAGGGTTGAGGAGACAGGGCGGCACCTTGAGAAGTATTGCAAGAGGTTTGGAGTTCCATTTGAGTACAATTGCCTTGCACAGAAATGGGAAACTATACAACTTGAGGACCTCAAAATTGATAGGGAAGAAGTAACTGTGGTTAACTGTTTGTTCAGATTGAAGAACCTGTCTGATGAAACTGTGACTGTGAACTGTCCAAGAGATGCTGTGTTAAGGTTGATCAGGAGGATTAATCCAAACATCTTCATACATGGGGTAGTCAATGGCACTTACAATGCACCATTTTTCTTGACTAGGTTCAGGGAAGCACTCTTCCACTTCTCATCATTGTTTGATTTGTTTGATGCTACTGTGCCTCGTGAAGATACTTGTAGGCTTATGTTTGAGAATGGGTTATTTGGAAGGGATGCAATCAATGTGATAGCATGTGAGGGGGTCGAAAGGGTTGAAAGACCAGAGACCTATAAGCAGTGGCAGGTTAGGAACCGAAGAGCAGGGTTTAAGCAACTTCCATTGGGCCCAGAACTAGTGAATAGAGTGAAAGAAATGGTGAAGATGGAATATCATAAAGATTTTGTAGTGGGTGAGGATGGCAAGTGGGTTTTGCAGGGATGGAAAGGGCGTATTCTTCATGCAGTTTCTACTTGGGTTCCTACTTAA 2073 0.4202 MLSTDSLLENFPGSGNGFIFENGPILVCTNQNQGSGFKLEDSSSPSNNSESAGNSGPSSGTSCSKHSNPILRYISDILMDEEDDLERKPCMLQDCLRLQAAEKSFYDVLGSSYPSSQGQFHGCFRDDNTDPDDNFGGGTATSSESYSSSTTDNSYESDWVNSAGDFESSLLQRSLGDSPENTYEVLDGVPPDPFRETQAGVYFSNGSWNIIQSQTKPQMNEEGVMKKGSTAARGSREKRGHFMNEEEERSSKLSAVYSDDSEPSEMFDEVLLCKDGKSPAIFCANQEPSQIADSRGSNGKTTRSKKGSNKGTSPSTTVDLWTLLTQCAQAVASYDQRNANEILKQIRQHSAPLGDGLQRLAHYFAIGLEARLAAGTPKYKLLQSSSAADMLKAYKVYITASPFPRMSNFLANRTILKLVQNEGSLHIIDFGIFYGFQWPCLIQRLSERPGGPPRLRITGIDFPQPGFRPAERVEETGRHLEKYCKRFGVPFEYNCLAQKWETIQLEDLKIDREEVTVVNCLFRLKNLSDETVTVNCPRDAVLRLIRRINPNIFIHGVVNGTYNAPFFLTRFREALFHFSSLFDLFDATVPREDTCRLMFENGLFGRDAINVIACEGVERVERPETYKQWQVRNRRAGFKQLPLGPELVNRVKEMVKMEYHKDFVVGEDGKWVLQGWKGRILHAVSTWVPT* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00783 690 ProSiteProfiles GRAS family profile. 311 688 IPR005202 -
Rops3g00783 690 MobiDBLite consensus disorder prediction 231 255 - -
Rops3g00783 690 MobiDBLite consensus disorder prediction 134 154 - -
Rops3g00783 690 MobiDBLite consensus disorder prediction 36 64 - -
Rops3g00783 690 MobiDBLite consensus disorder prediction 215 259 - -
Rops3g00783 690 MobiDBLite consensus disorder prediction 286 315 - -
Rops3g00783 690 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 247 682 IPR005202 -
Rops3g00783 690 Pfam GRAS domain family 322 687 IPR005202 -
Rops3g00783 690 MobiDBLite consensus disorder prediction 120 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00783 Rops-Chr3 9564898 9567458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00783 238 690 GRAS Transcription Factor Family AT1G07530 56.867 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops3g00783 GRAS 3e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00783 - - lja:Lj3g3v3213190.1 1085.48