Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00772 ATGAGTTTTGTTTTCCGAGGGAGTAGGGGAGATATTGAAAGTGGATTTCCAGGATATGTTCCTGAAAGAACCTCAATGAGACTTCATCCATCTCAGCCAGTTAATAGCAATTCTCTATCTTTCCTTATTACAGTTATTTTGATATTCATGATTTTAAACTCTCCTCAGATGCTACATTATTTTTGGCTCTGGGTTGTCCTGGCTGTCTTTGTGATGGCTACAAGTCTGAGGATGTATGCAACTTGTCAACAGCTTCAAGCACAGGCAAGAGCTCATGCTGCAGCAGCCTCTGGGTTGCTTGGCCACACTGAATTACGTCTTCACATGCCACCATCTATTGCAATTGCAACTAGAGGAAGATTGCAGGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAGATTATGACACTTTGAGAGCTCTGGACTCTGATACAGCGTCCAGTTCTCGTTCAATGACTGAGGAAGAGATAAATGCGTTGCCTATTCATAAATATAAAGTTCCAGCCCCAAAAAAAGATGGCTCAGCCAGTTTGGCATCGTCTTCTTCAGATGCAGCTGAGATTAAACAAGACTCCGGAGGAACAGAGGGAAGTACCAAAGGTCCAGAAGATGAACTGACATGTACTATATGCTTGGACCAAGTTAAGAAGGGGGAGCTTGTTCGCAGCTTGCCATGCTTGCATCAGTTTCATGCTAACTGCATCGATCCATGGCTCCGGCAACAAGGAACATGTCCTGTGTGCAAATTTACGATAGGGTCTGGAAGGCAGAGCGAGTCCAATGGTTCAGATATTGTGTAG 816 0.4412 MSFVFRGSRGDIESGFPGYVPERTSMRLHPSQPVNSNSLSFLITVILIFMILNSPQMLHYFWLWVVLAVFVMATSLRMYATCQQLQAQARAHAAAASGLLGHTELRLHMPPSIAIATRGRLQGLRLQLALLDREFDELDYDTLRALDSDTASSSRSMTEEEINALPIHKYKVPAPKKDGSASLASSSSDAAEIKQDSGGTEGSTKGPEDELTCTICLDQVKKGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKFTIGSGRQSESNGSDIV* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00772 271 SMART ring_2 213 253 IPR001841 -
Rops3g00772 271 MobiDBLite consensus disorder prediction 176 208 - -
Rops3g00772 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 269 IPR013083 -
Rops3g00772 271 Pfam Ring finger domain 212 254 IPR001841 -
Rops3g00772 271 CDD RING-H2_PA-TM-RING 212 254 - -
Rops3g00772 271 MobiDBLite consensus disorder prediction 180 202 - -
Rops3g00772 271 PANTHER TARGET OF ERK KINASE MPK-1 1 260 - -
Rops3g00772 271 SUPERFAMILY RING/U-box 208 260 - -
Rops3g00772 271 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00772 Rops-Chr3 9440262 9448329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00772 1 271 C3H Transcription Factor Family AT3G55530 68.841 8.42e-127 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00772 K16283 - gmx:100805406 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00772 3 9440262 9448329 Rops3g00772 3 9440262 9448329 ECH