Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00771 ATGAATTCGGAAACTCAACACGGAACGGCGTCGTACTGGTGCTATAGCTGCTCCCGTTTTGTTCACCTCTTGGGACACGACAACATCGTATGTCCCTACTGCGAAAGTGGCTTTGTCGAAGAGATCCACGCCGATCAATCACCGCACCACCGTCTAAGTCCCTTCCCCGACGACCCCATCTCTTCCCGGAGACAAGGGTTTCGACGGAGACGCCGCGACGCCGGTAGCCGCTCCCCTTTCAACCCCGTCATTGTTTTGCGAGGACCTGGAGATGACGGCGCCGATCGCGAAGGAGGAAGCGCGGCGTTTGAGTTGTACTACGACGACGGCGATGGCTCCGGCCTCCGTCCACTTCCGCCGACGGTGTCGGAGTTTCTTCTCGGGTCGGGGTTCGATCGGTTGCTGGAGCAATTTTCGCAGATCGATATGAACGGTTTGGGCCAGCCGGAGAATCCGCCGGCGTCAAAAGCGGCAATCGAGTCGTTGCCGACGGTGGAGATCGGCGAGATCCAAATCAACACCGACGCACACTGCGCTGTTTGCAAAGAAGCGTTTGAGCTTGGCACGGAGGCGCGTGAGTTACCGTGCAAGCATATTTACCATTCCGATTGCATTTTTCCATGGCTTTCGATGCGAAACTCTTGCCCCGTTTGCCGCCGCGAGCTTCCTTCTGATCAGAACCCTTTGGAGAGCAGAATTTCGGGTCAAATCGACGAAGAAGCGATAGGGTTAACGATATGGAGGTTGCCCGGTGGAGGATTCGCAGTTGGGAGATTTTCCGGCGGCCGGCGAGCTGGCGAGAGTCATTTTCCGGTTGTGTACACTGAGATGGATGGTGGGTTAAATTCAAACGGAGCACCCAGAAGAATTTCTAGGACTGTGAGAAGCAATAGGGTTAGGGAAAGTCGTGGATTTGGAAGAGTTTTTCGTAATTTCTTTTCATTCTTTGGAAGACTTGGTTCTTCTAGGTCCACTTCTTCTTCTTCTTCTTCTTCTGGTTCTGAACATGTGTCTGTGAGTAGAAGCAGTAGCCTAGTGAATTCAGTATTCCATAGAAACTCACGGAGGACACATAGGAGGAGTTGGGTGGTGGAAGTGGAAGATTGA 1107 0.5312 MNSETQHGTASYWCYSCSRFVHLLGHDNIVCPYCESGFVEEIHADQSPHHRLSPFPDDPISSRRQGFRRRRRDAGSRSPFNPVIVLRGPGDDGADREGGSAAFELYYDDGDGSGLRPLPPTVSEFLLGSGFDRLLEQFSQIDMNGLGQPENPPASKAAIESLPTVEIGEIQINTDAHCAVCKEAFELGTEARELPCKHIYHSDCIFPWLSMRNSCPVCRRELPSDQNPLESRISGQIDEEAIGLTIWRLPGGGFAVGRFSGGRRAGESHFPVVYTEMDGGLNSNGAPRRISRTVRSNRVRESRGFGRVFRNFFSFFGRLGSSRSTSSSSSSSGSEHVSVSRSSSLVNSVFHRNSRRTHRRSWVVEVED* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00771 368 Pfam Protein of unknown function (DUF1117) 242 355 IPR010543 -
Rops3g00771 368 FunFam E3 ubiquitin-protein ligase RING1-like 140 225 - -
Rops3g00771 368 SUPERFAMILY RING/U-box 158 225 - -
Rops3g00771 368 MobiDBLite consensus disorder prediction 48 97 - -
Rops3g00771 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 57 223 - -
Rops3g00771 368 SMART ring_2 178 218 IPR001841 -
Rops3g00771 368 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Rops3g00771 368 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Rops3g00771 368 CDD RING-H2_RNF126-like 178 219 - -
Rops3g00771 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 225 IPR013083 -
Rops3g00771 368 Pfam Ring finger domain 177 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00771 Rops-Chr3 9433661 9435316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00771 117 230 C3H Transcription Factor Family AT5G01980 46.491 1.39e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00771 K11982 - gmx:100804867 483.796