Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00767 ATGTATCCAAACATAGCCTTAATGGGTAACTCACTGCTACCCCAGAGTGATGGAGAGGGGAATGAGGTAGTGGGGTTGATTGAAGAGGAGGTAACATGCAAACGTTGCATCCAGCCCTTATCTCTAGACACGATTTTCAAGAACAACGAGCAATGTGTGCACCCCTTTTGCATGGACTGCATAGCCAAATACATAGAGGTGAAGTTATATGAGAACATGGGGAACATCCCATGTCCTGCCTTGAACTGCAAGCAACTGTTAGACCCCGTGTTTTGCAGGTCAATTATCTATAAACAACTGTTTGACAAATGGGGTGATGCTCTTTGCACTTCGGCAGTTTTGGAGTTCCAACATAGATTATATTGCCCATATCAAGATTGCTCAGTCTTGGTTACAAGCCAGTGTGAAGCAAAGAAAGTGTTGTGTCCCAATTGCAAGAGGTACTTCTGCTTCAAGTGCCAGATTCCTTGGCAAGCAGGGTATAGGTGCCAGAGTGGACAATTAAGGGATAGAAATGATGTTCTGTTTGGAAAACTCATGAAGAGAAAAGGATGGAGGAGATGTTATAGATGTGGTCAATGTGTTGAGCATGTTGGAGGTTGTCAAGCCATTCATTGCAGATGGGGTGCTGATTTTTGCATTGGATGTGGAGGACGGGATTTGACTCCTATACAATGA 678 0.4395 MYPNIALMGNSLLPQSDGEGNEVVGLIEEEVTCKRCIQPLSLDTIFKNNEQCVHPFCMDCIAKYIEVKLYENMGNIPCPALNCKQLLDPVFCRSIIYKQLFDKWGDALCTSAVLEFQHRLYCPYQDCSVLVTSQCEAKKVLCPNCKRYFCFKCQIPWQAGYRCQSGQLRDRNDVLFGKLMKRKGWRRCYRCGQCVEHVGGCQAIHCRWGADFCIGCGGRDLTPIQ* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00767 225 Gene3D - 162 221 - -
Rops3g00767 225 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 33 217 IPR031127 GO:0004842|GO:0016567
Rops3g00767 225 ProSiteProfiles Zinc finger RING-type profile. 33 82 IPR001841 -
Rops3g00767 225 SUPERFAMILY RING/U-box 28 111 - -
Rops3g00767 225 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Rops3g00767 225 SUPERFAMILY RING/U-box 103 164 - -
Rops3g00767 225 SMART ibrneu5 102 163 IPR002867 GO:0008270
Rops3g00767 225 FunFam RBR-type E3 ubiquitin transferase 28 115 - -
Rops3g00767 225 ProSiteProfiles TRIAD supradomain profile. 29 225 IPR044066 -
Rops3g00767 225 SUPERFAMILY RING/U-box 172 218 - -
Rops3g00767 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 113 IPR013083 -
Rops3g00767 225 Pfam IBR domain, a half RING-finger domain 108 163 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00767 Rops-Chr3 9352207 9352988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00767 52 218 C3H Transcription Factor Family AT2G19610 26.425 4.93e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00767 K11975 - pop:18100148 243.817