Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00766 ATGGGTAGCACCCCCATGGGAAAAAAGTTTGAAGGTTTGCAATGCCATGATCATGGACATGGGAACCATGAGGTCATTAGCTTGATTGAAGAGGATGATCATGGACATGGGATTTATGAGGGCGTTTGGATGATATGCGAGATTTGCACAGAGCCCTTTTCTCCACACACACTTTTCAAGAATAACAAGCTATGTGTGCACACCTTTTGCATGGACTGCATAGCCAAATATATAGAGGTGAAGGTAGATGAGAACGTGGGGAACATCCCATGTCCTGCCTTGAACTGCAAGCAACTCTTAGACCCTTTGTTTTGCAGGTCAATTATCTCAAAAGAACTGTTTGATAAATGGTGTGATGCTCTTTGCTCTTCAACAATTTTGGAGTTCCAACACCGATCATATTGTCCTTATCAAGGTTGCTCAGCACTGGTTACCAGCCAGTGTGAACCTGACAAAGTGTTGTGTCCCAATTGCAAGAGGTGCTTCTGCTTCAAGTGCCAGACTCCTTGGCATGCAGGGTACAAGTGCGAAGAGAGTGGAGAATTCAGGGATAGGAATGATATTTTGTTTGGAGAACTTGTGGAGAAAAATGGATGGCAGAGATGCTATTTATGTAGTCGATATGTTGAACGTGTTGGAGGTTGCCGACGAGTGCTTTGCAGTGATAAGAGGTATAAGGGAATTGGTGTGAAAAGCAGTTCAGAGATGCAACGTGCGAGATTTGTATTGAACCCATCACTCCAAAGACCTACTAATGCAGTTCCTTTCTTTTGA 774 0.4367 MGSTPMGKKFEGLQCHDHGHGNHEVISLIEEDDHGHGIYEGVWMICEICTEPFSPHTLFKNNKLCVHTFCMDCIAKYIEVKVDENVGNIPCPALNCKQLLDPLFCRSIISKELFDKWCDALCSSTILEFQHRSYCPYQGCSALVTSQCEPDKVLCPNCKRCFCFKCQTPWHAGYKCEESGEFRDRNDILFGELVEKNGWQRCYLCSRYVERVGGCRRVLCSDKRYKGIGVKSSSEMQRARFVLNPSLQRPTNAVPFF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00766 257 ProSitePatterns Zinc finger RING-type signature. 65 74 IPR017907 -
Rops3g00766 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 128 IPR013083 -
Rops3g00766 257 SMART ibrneu5 115 176 IPR002867 GO:0008270
Rops3g00766 257 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Rops3g00766 257 Pfam IBR domain, a half RING-finger domain 117 176 IPR002867 GO:0008270
Rops3g00766 257 Pfam RING-type zinc-finger 46 92 IPR027370 -
Rops3g00766 257 FunFam RBR-type E3 ubiquitin transferase 43 128 - -
Rops3g00766 257 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 27 220 IPR031127 GO:0004842|GO:0016567
Rops3g00766 257 ProSiteProfiles TRIAD supradomain profile. 42 257 IPR044066 -
Rops3g00766 257 SUPERFAMILY RING/U-box 116 178 - -
Rops3g00766 257 SUPERFAMILY RING/U-box 44 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00766 Rops-Chr3 9343336 9345846 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00766 46 220 C3H Transcription Factor Family AT2G19610 24.868 7.70e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00766 K11975 - pop:18100148 240.736