Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00752 ATGTATGCCTCAAAGTTTGGAGTTGATGAGGCAAAGATGATGGAAAGGCTCTGGGGTGAGAATTTCTTTGATCCAGCCACCAAAAAATGGACCAGCAAGAATACTGGTTCTCCTACATGCAAGCGTGGTTTTGTTCAGTTTTGTTATGAGCCCATCAAACAGATCATTGCAACTTGTATGAATGATCAGAAGGATAAGCTGAATTGTGATCCTGATGGACCACTAATGCTTTATGTCTCAAAGATGATTCCTGCTTCTGACAAGGGTAGGTTTTTTGCTTTTGGCCGGGTCTTCTCTGGTAGGGTCTCAACCGGTTTGAAAGTCAGAATTATGGGTCCAAATTATGTCCCTGGGGAGAAGAAAGACTTGTATGTTAAGAGTGTGCAAAGAACTGTCATCTGGATGGGGAAAAGGCAGGAAACTGTAGAGGATGTGCCTTGTGGTAACACAGTTGCCATGGTTGCGTCAGATCTTCCGAAACTTGTTGAAGGTCTTAAGCGGTTGGCCAAATCTGATCCTATGGTTGTGTGTACCATAGAGGAGTCTGGGGAGCATATTGTTGCTGGTGCTGGGGAACTCCACCTTGAGATCTGTTTGAAGGACTTGCAGGAAGATTTCATGGGTGGAGCTGAGATCATCAAGTCTGACCCTGTTGTGTCCTTCCGTGAGACTGTCTTGGAGAGATCTTGTCACACTGTGATGAGCAAGTTACCCAACAAGCACAACCGTCTGTACATGGAAGCAAGACCCATGGAAGAAGGGCTTGCAGAGGCTATTGAAGACGGTCATATTGGTCCAAGGGATGACCCTAAAGTTCGTTCCAAAATTTTGTCAGAAGAGTTTGGTTGGGACAAGGATCTTGCTAAGAAAATCTGGTGTTTTGGACCTGAAACCTTGGGACCTAATTTGGTGGTTGATATGTGTAAGGGTGTCCAATACCTGAATGAAAATAAAGACTCTGTTGTAGCTGGGTTCCAGTGGGCATCAAAAGAAGGTGCATTGGCTGAAGAAAACATGAGGGCCATCTGCTTTGAAGTCTGTGATGTTGTTCTCCATGCTGATGCTATCCACAGAGGTGGTGGTCAGATCATTCCTACAGCTAGGAGAGTGTTCTATGCTTCCCACTTGACTGCAAAGCCTAGGCTTCTTGAGCCTGTTTACCTGGTTGAAATTCAGGCACCTGAGCAGGCTCTTGGTGGCATCTACAGTGTTCTTAACCAGAAACGAGGGCATGTCTTTGAGGAAATTCAGAGGCCTGGTACCCCATTATACAACATCAAGGCATACCTCCCTGTCATTGAGTCCTTCGGGTTCTCGAGCAGATTGAGGGCTGCAACATCAGGGCAGGCTTTTCCACAGTGTATTTTTGATCACTGGGATATGATGTCATCAGATCCATTGGAGTTTGGATCACAAGCTGCACAGCTTGTTGCTGATATTCGTAAGAGGAAAGGCTTGAAGGAGCAGATGACACCACTCTCAGAATACTAG 1491 0.4574 MYASKFGVDEAKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLNCDPDGPLMLYVSKMIPASDKGRFFAFGRVFSGRVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVAMVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVLERSCHTVMSKLPNKHNRLYMEARPMEEGLAEAIEDGHIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETLGPNLVVDMCKGVQYLNENKDSVVAGFQWASKEGALAEENMRAICFEVCDVVLHADAIHRGGGQIIPTARRVFYASHLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEIQRPGTPLYNIKAYLPVIESFGFSSRLRAATSGQAFPQCIFDHWDMMSSDPLEFGSQAAQLVADIRKRKGLKEQMTPLSEY* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00752 496 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 67 - -
Rops3g00752 496 Gene3D Yeast translation eEF2 (G' domain) 1 69 - -
Rops3g00752 496 Gene3D Elongation Factor G (Translational Gtpase), domain 3 174 221 - -
Rops3g00752 496 Gene3D - 377 486 - -
Rops3g00752 496 SUPERFAMILY Translation proteins 65 155 IPR009000 -
Rops3g00752 496 Gene3D - 227 376 IPR014721 -
Rops3g00752 496 FunFam Translation elongation factor 2 57 161 - -
Rops3g00752 496 Pfam Elongation factor Tu domain 2 93 155 IPR004161 GO:0005525
Rops3g00752 496 CDD EF2_snRNP_III 150 216 - -
Rops3g00752 496 Pfam Elongation factor G, domain IV 268 379 IPR005517 GO:0005525
Rops3g00752 496 CDD EF2_II 74 154 - -
Rops3g00752 496 FunFam Translation elongation factor 2 226 379 - -
Rops3g00752 496 SUPERFAMILY Ribosomal protein S5 domain 2-like 219 383 IPR020568 -
Rops3g00752 496 CDD aeEF2_snRNP_like_IV 216 388 - -
Rops3g00752 496 SMART EFG_IV_2 262 379 IPR005517 GO:0005525
Rops3g00752 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 67 IPR027417 -
Rops3g00752 496 FunFam Translation elongation factor 2 380 496 - -
Rops3g00752 496 SUPERFAMILY EF-G C-terminal domain-like 155 217 IPR035647 -
Rops3g00752 496 Pfam Elongation factor G C-terminus 381 467 IPR000640 -
Rops3g00752 496 SMART EFG_C_a 381 470 IPR000640 -
Rops3g00752 496 Gene3D Translation factors 70 173 - -
Rops3g00752 496 Pfam Elongation Factor G, domain III 156 206 IPR041095 -
Rops3g00752 496 SUPERFAMILY EF-G C-terminal domain-like 384 493 IPR035647 -
Rops3g00752 496 CDD eEF2_snRNP_like_C 384 462 - -
Rops3g00752 496 FunFam Translation elongation factor 2 150 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00752 Rops-Chr3 9229324 9231363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00752 1 67 Eukaryotic Initiation Factors Gene Family AT1G56070 92.537 1.60e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00752 K03234 - gmx:100804251 819.305