LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g00742	ATGAACTGCTCCATTTCCGGCGAGGTTCCGGAAGAGCCTGTGGTGTCGAAGAACAGTGGTCTCCTCTTCGAGAAGCGTTTAATCGAGAGACACATATCGGATTATGGGAAGTGTCCAATTACTGGAGAACCACTTACTCTGGATGATATTGTACCAGTCAAAACAGGCAAGATAGTGAAGCCCAGACCTGTGCAGGCAGCTAGCATCCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTATCGAATTTTGCATTGGAGCAACAACTGCACACAGCAAGGCAAGAGCTAAGTCATGCTCTATATCAGCATGATGCTGCTTGCCGCGTGATTGCAAGACTTAAAAAGGAACGAGATGAAGCTAGGTCTTTACTTGCACAGGCAGAAAGGCAGTTCCCTGTTTCTGCACCAAATGCCATAACAGCAAATGCCCCCGTTATGAGCAATGGGAAAAGAGCTGCTGAGGATGAGGAGCTGGCACCAAATGCAAAGAAGATGCATCCTGGAATATCTTCTAGCATAATTTCTGAGCTAACAGACTGCAATGCTGCTCTTTCTCAGCAGAGGAAAAAGCGCCAGATTCCTGCAACTTTGGCACCTATTGAAGCTCTAGAGGCATATACCCAGATATCTAGTCATCCATTCCACAAAACGAACAAACAAGGCATTATATCTCTTGATACCCTTTATTCCAAGGACTTAATTGCAACTGGAAGTATTGATACAAATGCTGTTATTTTTGACCGACCATCGGGACAAATATTAGCTACACTCAGTGGTCACACAAAAAAGGTAAACAGCGTAAAGTTTGTAGCTCAGGGCGAGTCGTTCTTAACTGGTTCAGCAGATAAGACAGTTCGATTGTGGCAAGGGTCAGATGATGGTAGCTATAACTGCAAGCACATCTTGCGTGATCATACGGCTGAGGTGCAAGCTGTAACAGTCCATGCAACTCGTGTTGCACCCGGAAAGAAGGAAAACTCACGTGAAAACGGTGGCAACAAGTGGCCTGCTCCTCATGCACAAATGTTAGTGTGTAGGCTTGTCTTTCACATGTCCATGCAACTTGAAACAGCAGCTGCACCATGA	1101	0.4569	MNCSISGEVPEEPVVSKNSGLLFEKRLIERHISDYGKCPITGEPLTLDDIVPVKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQFPVSAPNAITANAPVMSNGKRAAEDEELAPNAKKMHPGISSSIISELTDCNAALSQQRKKRQIPATLAPIEALEAYTQISSHPFHKTNKQGIISLDTLYSKDLIATGSIDTNAVIFDRPSGQILATLSGHTKKVNSVKFVAQGESFLTGSADKTVRLWQGSDDGSYNCKHILRDHTAEVQAVTVHATRVAPGKKENSRENGGNKWPAPHAQMLVCRLVFHMSMQLETAAAP*	367

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g00742	366	ProSiteProfiles	U-box domain profile.	1	70	IPR003613	GO:0004842\|GO:0016567
	Rops3g00742	366	FunFam	Pre-mRNA-processing factor 19, putative	1	58	-	-
	Rops3g00742	366	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	60	IPR013083	-
	Rops3g00742	366	Gene3D	-	201	328	IPR015943	GO:0005515
	Rops3g00742	366	ProSiteProfiles	Trp-Asp (WD) repeats profile.	262	294	IPR001680	GO:0005515
	Rops3g00742	366	Pfam	Prp19/Pso4-like	66	131	IPR013915	-
	Rops3g00742	366	PANTHER	PRE-MRNA-PROCESSING FACTOR 19	1	322	IPR038959	GO:0000398\|GO:0000974\|GO:0006281\|GO:0061630
	Rops3g00742	366	Coils	Coil	115	135	-	-
	Rops3g00742	366	CDD	RING-Ubox_PRP19	1	54	-	-
	Rops3g00742	366	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	262	294	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g00742	Rops-Chr3	9101245	9102345	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops3g00742	1	322	U-box Gene Family	AT2G33340	74.224	4.57e-180	507

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g00742	K10599		-	gmx:100527039	611.298

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