Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00742 ATGAACTGCTCCATTTCCGGCGAGGTTCCGGAAGAGCCTGTGGTGTCGAAGAACAGTGGTCTCCTCTTCGAGAAGCGTTTAATCGAGAGACACATATCGGATTATGGGAAGTGTCCAATTACTGGAGAACCACTTACTCTGGATGATATTGTACCAGTCAAAACAGGCAAGATAGTGAAGCCCAGACCTGTGCAGGCAGCTAGCATCCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTATCGAATTTTGCATTGGAGCAACAACTGCACACAGCAAGGCAAGAGCTAAGTCATGCTCTATATCAGCATGATGCTGCTTGCCGCGTGATTGCAAGACTTAAAAAGGAACGAGATGAAGCTAGGTCTTTACTTGCACAGGCAGAAAGGCAGTTCCCTGTTTCTGCACCAAATGCCATAACAGCAAATGCCCCCGTTATGAGCAATGGGAAAAGAGCTGCTGAGGATGAGGAGCTGGCACCAAATGCAAAGAAGATGCATCCTGGAATATCTTCTAGCATAATTTCTGAGCTAACAGACTGCAATGCTGCTCTTTCTCAGCAGAGGAAAAAGCGCCAGATTCCTGCAACTTTGGCACCTATTGAAGCTCTAGAGGCATATACCCAGATATCTAGTCATCCATTCCACAAAACGAACAAACAAGGCATTATATCTCTTGATACCCTTTATTCCAAGGACTTAATTGCAACTGGAAGTATTGATACAAATGCTGTTATTTTTGACCGACCATCGGGACAAATATTAGCTACACTCAGTGGTCACACAAAAAAGGTAAACAGCGTAAAGTTTGTAGCTCAGGGCGAGTCGTTCTTAACTGGTTCAGCAGATAAGACAGTTCGATTGTGGCAAGGGTCAGATGATGGTAGCTATAACTGCAAGCACATCTTGCGTGATCATACGGCTGAGGTGCAAGCTGTAACAGTCCATGCAACTCGTGTTGCACCCGGAAAGAAGGAAAACTCACGTGAAAACGGTGGCAACAAGTGGCCTGCTCCTCATGCACAAATGTTAGTGTGTAGGCTTGTCTTTCACATGTCCATGCAACTTGAAACAGCAGCTGCACCATGA 1101 0.4569 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHISDYGKCPITGEPLTLDDIVPVKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQFPVSAPNAITANAPVMSNGKRAAEDEELAPNAKKMHPGISSSIISELTDCNAALSQQRKKRQIPATLAPIEALEAYTQISSHPFHKTNKQGIISLDTLYSKDLIATGSIDTNAVIFDRPSGQILATLSGHTKKVNSVKFVAQGESFLTGSADKTVRLWQGSDDGSYNCKHILRDHTAEVQAVTVHATRVAPGKKENSRENGGNKWPAPHAQMLVCRLVFHMSMQLETAAAP* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00742 366 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Rops3g00742 366 FunFam Pre-mRNA-processing factor 19, putative 1 58 - -
Rops3g00742 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Rops3g00742 366 Gene3D - 201 328 IPR015943 GO:0005515
Rops3g00742 366 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Rops3g00742 366 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Rops3g00742 366 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 322 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Rops3g00742 366 Coils Coil 115 135 - -
Rops3g00742 366 CDD RING-Ubox_PRP19 1 54 - -
Rops3g00742 366 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Rops3g00742 366 SMART WD40_4 212 252 IPR001680 GO:0005515
Rops3g00742 366 SMART WD40_4 255 294 IPR001680 GO:0005515
Rops3g00742 366 SUPERFAMILY WD40 repeat-like 224 320 IPR036322 GO:0005515
Rops3g00742 366 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Rops3g00742 366 SUPERFAMILY RING/U-box 1 53 - -
Rops3g00742 366 Pfam WD domain, G-beta repeat 256 293 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00742 Rops-Chr3 9101245 9102345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00742 1 322 U-box Gene Family AT2G33340 74.224 4.57e-180 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00742 K10599 - gmx:100527039 611.298