Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops3g00741 | ATGAACTGCTCCATTTCCGGCGAGGTTCCGGAAGAGCCTGTGGTGTCGAAGAACAGTGGTCTCCTCTTCGAGAAGTGTTTAATCGAGAGACACATATCGGATTATGGGAAGTGTCCAATTACTGGAGAACCACTTACTCTGGATGATATTGTACCAGTCAAAACAGGCAAGATAGTGAAGCCCAGACCTGTGCAGGCAGCTAGCATCCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTATCGAATTTTGCATTGGAGCAACAACTGCACACAGCAAGGCAAGAGCTAAGTCATGCTCTATATCAGCATGATGCTGCTTGCCGCGTGATTGCAAGACTTAAAAAGGAACGAGATGAAGCTAGGTCTTTACTTGCACAGGCAGAAAGGCAGTTCCCTGTTTCTGCACCAAATGCCATAACAGCAAATGCCCCCGTTATGAGCAATGGGAAAAGAGCTGCTGAGGATGAGGAGCTGGCACCAAATGCAAAGAAGATGCATCCTGGAATATCTTCTAGCATAATTTCTGAGCTAACAGACTGCAATTGCTCTTTCTCGAGAGGAAAAAGCGCTGCATTCCCGCAACTTTGGCACCTATTGAAGCTCTAG | 621 | 0.4686 | MNCSISGEVPEEPVVSKNSGLLFEKCLIERHISDYGKCPITGEPLTLDDIVPVKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQFPVSAPNAITANAPVMSNGKRAAEDEELAPNAKKMHPGISSSIISELTDCNCSFSRGKSAAFPQLWHLLKL* | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops3g00741 | 206 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 1 | 186 | IPR038959 | GO:0000398|GO:0000974|GO:0006281|GO:0061630 | |
| Rops3g00741 | 206 | FunFam | Pre-mRNA-processing factor 19, putative | 1 | 58 | - | - | |
| Rops3g00741 | 206 | Coils | Coil | 115 | 135 | - | - | |
| Rops3g00741 | 206 | CDD | RING-Ubox_PRP19 | 1 | 54 | - | - | |
| Rops3g00741 | 206 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 60 | IPR013083 | - | |
| Rops3g00741 | 206 | SMART | Ubox_2 | 1 | 66 | IPR003613 | GO:0004842|GO:0016567 | |
| Rops3g00741 | 206 | SUPERFAMILY | RING/U-box | 1 | 53 | - | - | |
| Rops3g00741 | 206 | Pfam | Prp19/Pso4-like | 66 | 131 | IPR013915 | - | |
| Rops3g00741 | 206 | ProSiteProfiles | U-box domain profile. | 1 | 70 | IPR003613 | GO:0004842|GO:0016567 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops3g00741 | Rops-Chr3 | 9083596 | 9084216 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops3g00741 | 1 | 199 | U-box Gene Family | AT2G33340 | 75.500 | 5.95e-107 | 314 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops3g00741 | K10599 | - | gmx:100527039 | 363.229 |