Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00731 ATGAGGAAGCCTGAGCCATCTGGAAAAAACAACTTCAATAAGCTTAGAAAGGGGTTGTGGTCACCTGAGGAAGATGACAAACTCATGAACTACATGTTAAACAGTGGACAAGGTTGTTGGAGTGATGTGGCCAGAAATGCTGGCTTGCAAAGGTGTGGCAAAAGTTGTCGGCTTCGATGGATCAATTACTTGAGGCCTGATCTCAAACGAGGTGCATTCTCACCACAAGAAGAGGAACTCATCATTCATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGCTTACCTGGGAGAACTGACAATGAAATTAAGAACTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACATGTCATCCACAACCTCACCAAACACAAGCGAGTCCTCATATGACCCTAACAACAAAGACCTTAACATGGGAGGTTTTACTTCTACACAAGATCAGCATGCTGATTTTATGCCTATGTTCAGTTCATCTCCATCACCATCAATGCAAGCCACAGTTCTCAATACCATAATTGATAGGTTGCCTATGCTTGAGCATGGAATAAACATGCCAGCTGCTGGTGGATTCTTCAACAGTACAGGGTCATGTTTTTCACAAAGTGGAGTTGACAACAAGGGTTTTTATTTGGAAAATGGTGTCTTTGGGAGTGTAAATATTGGGGCAGAAGGGGAGATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTATTTCTGAACATAACCTAAAAGTGGAGAATACAGGCAACAACAGAGATACTAACAATAGTTACTTTGATGACATAAACAGTATTGTTAACAACTGCAATATTAGCAACAATAAGAGAGGTGAAAACAGAGCTGGGGTGGAGAATTTATTTCAAGAAGAGTTAACCATGGGAGAATGGGACTTGGAGGACTTGATGAAAGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAACTGA 963 0.4081 MRKPEPSGKNNFNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSTTSPNTSESSYDPNNKDLNMGGFTSTQDQHADFMPMFSSSPSPSMQATVLNTIIDRLPMLEHGINMPAAGGFFNSTGSCFSQSGVDNKGFYLENGVFGSVNIGAEGEMYVPPLESVSTISEHNLKVENTGNNRDTNNSYFDDINSIVNNCNISNNKRGENRAGVENLFQEELTMGEWDLEDLMKDVSSFPFLDFSN* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00731 320 CDD SANT 72 112 IPR001005 -
Rops3g00731 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Rops3g00731 320 Gene3D - 14 70 - -
Rops3g00731 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 64 IPR017930 -
Rops3g00731 320 PANTHER MYB DOMAIN PROTEIN 55 11 245 - -
Rops3g00731 320 Gene3D - 71 143 - -
Rops3g00731 320 FunFam MYB transcription factor 14 70 - -
Rops3g00731 320 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Rops3g00731 320 MobiDBLite consensus disorder prediction 121 148 - -
Rops3g00731 320 FunFam Transcription factor MYB46 71 140 - -
Rops3g00731 320 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Rops3g00731 320 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Rops3g00731 320 CDD SANT 20 64 IPR001005 -
Rops3g00731 320 SMART sant 69 117 IPR001005 -
Rops3g00731 320 SMART sant 16 66 IPR001005 -
Rops3g00731 320 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Rops3g00731 320 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00731 Rops-Chr3 8954890 8957577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00731 8 318 MYB Transcription Factor Family AT3G08500 47.447 5.71e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops3g00731 Myb_DNA-binding 9.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00731 K09422 - gmx:100786151 520.776